Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1192 and Shew_1193 are separated by 2 nucleotides Shew_1193 and Shew_1194 are separated by 209 nucleotides Shew_1194 and Shew_1195 are separated by 91 nucleotides
Shew_1192: Shew_1192 - thiamine-monophosphate kinase (RefSeq), at 1,383,674 to 1,384,645
_1192
Shew_1193: Shew_1193 - phosphatidylglycerophosphatase (RefSeq), at 1,384,648 to 1,385,142
_1193
Shew_1194: Shew_1194 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 1,385,352 to 1,385,789
_1194
Shew_1195: Shew_1195 - hypothetical protein (RefSeq), at 1,385,881 to 1,387,086
_1195
Position (kb)
1385
1386 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1385.244 kb on - strand at 1385.356 kb on - strand at 1385.621 kb on - strand, within Shew_1194 at 1385.632 kb on - strand, within Shew_1194 at 1385.703 kb on - strand, within Shew_1194 at 1385.825 kb on + strand at 1385.848 kb on + strand at 1386.038 kb on - strand, within Shew_1195 at 1386.203 kb on - strand, within Shew_1195
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 1,385,244 - -0.4 1,385,356 - +0.7 1,385,621 - Shew_1194 0.61 -2.2 1,385,632 - Shew_1194 0.64 +0.8 1,385,703 - Shew_1194 0.80 +1.9 1,385,825 + +2.3 1,385,848 + +2.1 1,386,038 - Shew_1195 0.13 +0.2 1,386,203 - Shew_1195 0.27 +0.3
Or see this region's nucleotide sequence