Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1146 and Shew_1147 are separated by 173 nucleotides Shew_1147 and Shew_1148 are separated by 260 nucleotides Shew_1148 and Shew_1149 are separated by 148 nucleotides
Shew_1146: Shew_1146 - hypothetical protein (RefSeq), at 1,321,638 to 1,321,952
_1146
Shew_1147: Shew_1147 - hypothetical protein (RefSeq), at 1,322,126 to 1,322,689
_1147
Shew_1148: Shew_1148 - hypothetical protein (RefSeq), at 1,322,950 to 1,323,399
_1148
Shew_1149: Shew_1149 - LysR family transcriptional regulator (RefSeq), at 1,323,548 to 1,324,423
_1149
Position (kb) 1322
1323
1324 Strain fitness (log2 ratio) -2
-1
0
1 at 1322.060 kb on + strand at 1322.324 kb on + strand, within Shew_1147 at 1322.470 kb on - strand, within Shew_1147 at 1322.607 kb on + strand, within Shew_1147 at 1322.615 kb on - strand, within Shew_1147 at 1322.956 kb on - strand at 1323.270 kb on + strand, within Shew_1148 at 1323.286 kb on + strand, within Shew_1148 at 1323.622 kb on + strand at 1323.901 kb on + strand, within Shew_1149 at 1323.909 kb on - strand, within Shew_1149
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 1,322,060 + +0.2 1,322,324 + Shew_1147 0.35 +1.2 1,322,470 - Shew_1147 0.61 +1.3 1,322,607 + Shew_1147 0.85 -2.0 1,322,615 - Shew_1147 0.87 -0.3 1,322,956 - -0.3 1,323,270 + Shew_1148 0.71 +0.3 1,323,286 + Shew_1148 0.75 +1.0 1,323,622 + +0.7 1,323,901 + Shew_1149 0.40 -2.1 1,323,909 - Shew_1149 0.41 +0.5
Or see this region's nucleotide sequence