Strain Fitness in Shewanella loihica PV-4 around Shew_1056

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntera and Shew_1056 are separated by 104 nucleotidesShew_1056 and Shew_1057 are separated by 128 nucleotidesShew_1057 and Shew_1058 are separated by 44 nucleotides Shew_1055: era - GTP-binding protein Era (RefSeq), at 1,217,607 to 1,218,602 era Shew_1056: Shew_1056 - DNA repair protein RecO (RefSeq), at 1,218,707 to 1,219,402 _1056 Shew_1057: Shew_1057 - pyridoxal phosphate biosynthetic protein PdxJ (RefSeq), at 1,219,531 to 1,220,268 _1057 Shew_1058: Shew_1058 - holo-acyl-carrier-protein synthase (RefSeq), at 1,220,313 to 1,220,714 _1058 Position (kb) 1218 1219 1220Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1218.909 kb on - strand, within Shew_1056at 1219.206 kb on - strand, within Shew_1056at 1219.269 kb on + strand, within Shew_1056at 1219.380 kb on - strandat 1220.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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1,218,909 - Shew_1056 0.29 -3.9
1,219,206 - Shew_1056 0.72 -2.4
1,219,269 + Shew_1056 0.81 -5.9
1,219,380 - -2.0
1,220,302 + -0.2

Or see this region's nucleotide sequence