Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0780 and Shew_0781 are separated by 119 nucleotides Shew_0781 and Shew_0782 are separated by 220 nucleotides Shew_0782 and Shew_0783 are separated by 134 nucleotides
Shew_0780: Shew_0780 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 891,496 to 892,602
_0780
Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573
_0781
Shew_0782: Shew_0782 - DNA-binding transcriptional regulator AsnC (RefSeq), at 896,794 to 897,255
_0782
Shew_0783: Shew_0783 - pseudouridylate synthase (RefSeq), at 897,390 to 898,067
_0783
Position (kb) 892
893
894
895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 891.965 kb on + strand, within Shew_0780 at 892.016 kb on + strand, within Shew_0780 at 892.038 kb on + strand, within Shew_0780 at 892.046 kb on - strand, within Shew_0780 at 892.084 kb on - strand, within Shew_0780 at 892.089 kb on - strand, within Shew_0780 at 892.167 kb on - strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.381 kb on + strand, within Shew_0780 at 892.876 kb on - strand at 892.886 kb on - strand at 893.009 kb on + strand at 893.060 kb on + strand at 893.140 kb on - strand, within Shew_0781 at 893.256 kb on - strand, within Shew_0781 at 893.461 kb on - strand, within Shew_0781 at 893.471 kb on - strand, within Shew_0781 at 893.683 kb on + strand, within Shew_0781 at 893.806 kb on + strand, within Shew_0781 at 893.806 kb on + strand, within Shew_0781 at 893.814 kb on - strand, within Shew_0781 at 893.852 kb on - strand, within Shew_0781 at 894.072 kb on - strand, within Shew_0781 at 894.143 kb on - strand, within Shew_0781 at 894.508 kb on - strand, within Shew_0781 at 894.508 kb on - strand, within Shew_0781 at 894.558 kb on - strand, within Shew_0781 at 894.607 kb on + strand, within Shew_0781 at 894.624 kb on + strand, within Shew_0781 at 894.624 kb on + strand, within Shew_0781 at 894.776 kb on + strand, within Shew_0781 at 894.812 kb on + strand, within Shew_0781 at 894.887 kb on + strand, within Shew_0781 at 894.895 kb on - strand, within Shew_0781 at 895.043 kb on - strand, within Shew_0781 at 895.145 kb on - strand, within Shew_0781 at 895.305 kb on - strand, within Shew_0781 at 895.349 kb on - strand, within Shew_0781 at 895.531 kb on + strand, within Shew_0781 at 895.592 kb on + strand, within Shew_0781 at 895.633 kb on + strand, within Shew_0781 at 895.769 kb on + strand, within Shew_0781 at 895.804 kb on + strand, within Shew_0781 at 895.853 kb on + strand, within Shew_0781 at 896.086 kb on - strand, within Shew_0781 at 896.151 kb on - strand, within Shew_0781 at 896.168 kb on - strand, within Shew_0781 at 896.219 kb on - strand at 896.504 kb on + strand at 896.800 kb on - strand at 896.973 kb on + strand, within Shew_0782 at 897.066 kb on + strand, within Shew_0782 at 897.073 kb on - strand, within Shew_0782 at 897.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 891,965 + Shew_0780 0.42 +1.5 892,016 + Shew_0780 0.47 +0.4 892,038 + Shew_0780 0.49 -0.3 892,046 - Shew_0780 0.50 +1.4 892,084 - Shew_0780 0.53 +0.4 892,089 - Shew_0780 0.54 -0.8 892,167 - Shew_0780 0.61 -0.8 892,233 + Shew_0780 0.67 +0.5 892,233 + Shew_0780 0.67 -0.9 892,381 + Shew_0780 0.80 +0.0 892,876 - +0.3 892,886 - -2.0 893,009 + -0.0 893,060 + -1.4 893,140 - Shew_0781 0.11 +0.2 893,256 - Shew_0781 0.14 -1.6 893,461 - Shew_0781 0.19 +0.4 893,471 - Shew_0781 0.19 -0.3 893,683 + Shew_0781 0.25 -0.4 893,806 + Shew_0781 0.28 +0.2 893,806 + Shew_0781 0.28 +3.0 893,814 - Shew_0781 0.28 -0.8 893,852 - Shew_0781 0.29 -3.2 894,072 - Shew_0781 0.35 -0.8 894,143 - Shew_0781 0.37 +0.2 894,508 - Shew_0781 0.46 +0.6 894,508 - Shew_0781 0.46 -1.3 894,558 - Shew_0781 0.48 +0.6 894,607 + Shew_0781 0.49 +0.3 894,624 + Shew_0781 0.49 -0.2 894,624 + Shew_0781 0.49 +0.2 894,776 + Shew_0781 0.53 -1.4 894,812 + Shew_0781 0.54 -0.9 894,887 + Shew_0781 0.56 -0.2 894,895 - Shew_0781 0.56 -0.1 895,043 - Shew_0781 0.60 +0.1 895,145 - Shew_0781 0.63 -0.1 895,305 - Shew_0781 0.67 -2.0 895,349 - Shew_0781 0.68 -0.2 895,531 + Shew_0781 0.73 +1.9 895,592 + Shew_0781 0.75 -0.4 895,633 + Shew_0781 0.76 +0.0 895,769 + Shew_0781 0.79 +1.8 895,804 + Shew_0781 0.80 +0.2 895,853 + Shew_0781 0.81 +0.0 896,086 - Shew_0781 0.87 +0.6 896,151 - Shew_0781 0.89 -0.8 896,168 - Shew_0781 0.89 -0.2 896,219 - +0.7 896,504 + +0.4 896,800 - -0.2 896,973 + Shew_0782 0.39 +1.0 897,066 + Shew_0782 0.59 -1.0 897,073 - Shew_0782 0.60 +0.8 897,398 - -0.3
Or see this region's nucleotide sequence