Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0728 and Shew_0729 are separated by 248 nucleotides Shew_0729 and Shew_0730 are separated by 88 nucleotides Shew_0730 and Shew_0731 are separated by 8 nucleotides
Shew_0728: Shew_0728 - dihydroorotase (RefSeq), at 829,023 to 830,051
_0728
Shew_0729: Shew_0729 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 830,300 to 832,000
_0729
Shew_0730: Shew_0730 - protein of unknown function DUF395, YeeE/YedE (RefSeq), at 832,089 to 832,517
_0730
Shew_0731: Shew_0731 - protein of unknown function DUF395, YeeE/YedE (RefSeq), at 832,526 to 832,996
_0731
Position (kb) 830
831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 829.397 kb on - strand, within Shew_0728 at 829.426 kb on - strand, within Shew_0728 at 829.457 kb on - strand, within Shew_0728 at 829.635 kb on - strand, within Shew_0728 at 829.761 kb on - strand, within Shew_0728 at 829.880 kb on + strand, within Shew_0728 at 830.038 kb on - strand at 830.480 kb on - strand, within Shew_0729 at 830.480 kb on - strand, within Shew_0729 at 830.966 kb on - strand, within Shew_0729 at 831.494 kb on - strand, within Shew_0729 at 831.644 kb on + strand, within Shew_0729 at 831.652 kb on - strand, within Shew_0729 at 832.113 kb on - strand at 832.123 kb on - strand at 832.467 kb on + strand, within Shew_0730 at 832.636 kb on + strand, within Shew_0731 at 832.724 kb on - strand, within Shew_0731 at 832.825 kb on - strand, within Shew_0731
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 829,397 - Shew_0728 0.36 +0.0 829,426 - Shew_0728 0.39 +1.0 829,457 - Shew_0728 0.42 +0.4 829,635 - Shew_0728 0.59 +0.4 829,761 - Shew_0728 0.72 +0.4 829,880 + Shew_0728 0.83 -0.0 830,038 - -0.2 830,480 - Shew_0729 0.11 +1.7 830,480 - Shew_0729 0.11 +1.9 830,966 - Shew_0729 0.39 -1.7 831,494 - Shew_0729 0.70 -0.5 831,644 + Shew_0729 0.79 +1.3 831,652 - Shew_0729 0.79 -0.3 832,113 - +1.2 832,123 - +0.4 832,467 + Shew_0730 0.88 -1.8 832,636 + Shew_0731 0.23 -0.1 832,724 - Shew_0731 0.42 -0.6 832,825 - Shew_0731 0.63 +0.4
Or see this region's nucleotide sequence