Strain Fitness in Shewanella loihica PV-4 around Shew_0698

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrihA and Shew_0698 are separated by 628 nucleotidesShew_0698 and Shew_0699 are separated by 135 nucleotides Shew_0697: rihA - ribonucleoside hydrolase 1 (RefSeq), at 790,034 to 791,041 rihA Shew_0698: Shew_0698 - Na+/H+ antiporter NhaC (RefSeq), at 791,670 to 793,052 _0698 Shew_0699: Shew_0699 - Na+/H+ antiporter (RefSeq), at 793,188 to 794,663 _0699 Position (kb) 791 792 793 794Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 790.696 kb on + strand, within rihAat 791.009 kb on + strandat 791.043 kb on - strandat 791.081 kb on + strandat 791.564 kb on - strandat 791.685 kb on + strandat 791.685 kb on + strandat 791.712 kb on + strandat 791.740 kb on + strandat 791.748 kb on - strandat 791.969 kb on + strand, within Shew_0698at 791.994 kb on - strand, within Shew_0698at 792.246 kb on + strand, within Shew_0698at 792.380 kb on + strand, within Shew_0698at 792.411 kb on - strand, within Shew_0698at 793.055 kb on - strandat 793.455 kb on + strand, within Shew_0699at 793.504 kb on - strand, within Shew_0699at 793.633 kb on + strand, within Shew_0699at 793.984 kb on - strand, within Shew_0699

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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790,696 + rihA Shew_0697 0.66 +1.1
791,009 + +0.1
791,043 - +0.0
791,081 + +2.8
791,564 - -2.6
791,685 + -0.9
791,685 + -1.1
791,712 + -2.2
791,740 + -2.5
791,748 - -1.9
791,969 + Shew_0698 0.22 -0.9
791,994 - Shew_0698 0.23 -3.5
792,246 + Shew_0698 0.42 -0.9
792,380 + Shew_0698 0.51 -1.3
792,411 - Shew_0698 0.54 -0.3
793,055 - -1.1
793,455 + Shew_0699 0.18 +0.1
793,504 - Shew_0699 0.21 -1.3
793,633 + Shew_0699 0.30 +0.1
793,984 - Shew_0699 0.54 -1.2

Or see this region's nucleotide sequence