Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0642 and Shew_0643 are separated by 8 nucleotides Shew_0643 and Shew_0644 overlap by 8 nucleotides Shew_0644 and Shew_0645 are separated by 9 nucleotides
Shew_0642: Shew_0642 - type II secretion system protein (RefSeq), at 730,453 to 731,316
_0642
Shew_0643: Shew_0643 - type II secretion system protein (RefSeq), at 731,325 to 732,176
_0643
Shew_0644: Shew_0644 - FHA domain-containing protein (RefSeq), at 732,169 to 733,878
_0644
Shew_0645: Shew_0645 - type II and III secretion system protein (RefSeq), at 733,888 to 735,198
_0645
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 731.187 kb on + strand, within Shew_0642 at 731.195 kb on - strand, within Shew_0642 at 731.365 kb on + strand at 731.564 kb on + strand, within Shew_0643 at 731.601 kb on + strand, within Shew_0643 at 731.703 kb on - strand, within Shew_0643 at 732.281 kb on + strand at 732.289 kb on - strand at 732.553 kb on + strand, within Shew_0644 at 732.818 kb on - strand, within Shew_0644 at 732.818 kb on - strand, within Shew_0644 at 733.265 kb on - strand, within Shew_0644 at 733.371 kb on + strand, within Shew_0644 at 733.469 kb on + strand, within Shew_0644 at 733.541 kb on - strand, within Shew_0644 at 733.884 kb on + strand at 733.987 kb on - strand at 733.987 kb on - strand at 734.132 kb on - strand, within Shew_0645 at 734.132 kb on - strand, within Shew_0645 at 734.690 kb on + strand, within Shew_0645
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 731,187 + Shew_0642 0.85 -0.3 731,195 - Shew_0642 0.86 +0.2 731,365 + -0.6 731,564 + Shew_0643 0.28 -0.4 731,601 + Shew_0643 0.32 +0.1 731,703 - Shew_0643 0.44 -0.0 732,281 + +0.7 732,289 - -0.5 732,553 + Shew_0644 0.22 +0.2 732,818 - Shew_0644 0.38 -0.0 732,818 - Shew_0644 0.38 -3.3 733,265 - Shew_0644 0.64 -3.4 733,371 + Shew_0644 0.70 -0.1 733,469 + Shew_0644 0.76 +0.2 733,541 - Shew_0644 0.80 -1.2 733,884 + +0.4 733,987 - -0.1 733,987 - +0.6 734,132 - Shew_0645 0.19 +0.9 734,132 - Shew_0645 0.19 +0.2 734,690 + Shew_0645 0.61 -1.5
Or see this region's nucleotide sequence