Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0636 and Shew_0637 are separated by 29 nucleotides Shew_0637 and Shew_0638 are separated by 182 nucleotides Shew_0638 and Shew_0639 are separated by 78 nucleotides Shew_0639 and Shew_0640 are separated by 32 nucleotides
Shew_0636: Shew_0636 - hypothetical protein (RefSeq), at 723,307 to 723,765
_0636
Shew_0637: Shew_0637 - hypothetical protein (RefSeq), at 723,795 to 724,472
_0637
Shew_0638: Shew_0638 - cell surface receptor IPT/TIG domain-containing protein (RefSeq), at 724,655 to 728,878
_0638
Shew_0639: Shew_0639 - hypothetical protein (RefSeq), at 728,957 to 729,604
_0639
Shew_0640: Shew_0640 - TPR repeat-containing protein (RefSeq), at 729,637 to 730,119
_0640
Position (kb) 724
725
726
727
728
729 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 723.662 kb on - strand, within Shew_0636 at 723.755 kb on + strand at 724.451 kb on + strand at 724.496 kb on + strand at 724.676 kb on + strand at 725.197 kb on - strand, within Shew_0638 at 725.327 kb on + strand, within Shew_0638 at 725.440 kb on + strand, within Shew_0638 at 725.497 kb on + strand, within Shew_0638 at 726.047 kb on - strand, within Shew_0638 at 726.099 kb on - strand, within Shew_0638 at 726.118 kb on - strand, within Shew_0638 at 726.179 kb on + strand, within Shew_0638 at 726.203 kb on + strand, within Shew_0638 at 726.282 kb on + strand, within Shew_0638 at 727.254 kb on + strand, within Shew_0638 at 727.411 kb on + strand, within Shew_0638 at 727.428 kb on + strand, within Shew_0638 at 727.445 kb on - strand, within Shew_0638 at 727.544 kb on - strand, within Shew_0638 at 727.558 kb on + strand, within Shew_0638 at 728.078 kb on - strand, within Shew_0638 at 728.085 kb on - strand, within Shew_0638 at 728.273 kb on - strand, within Shew_0638 at 728.273 kb on - strand, within Shew_0638 at 728.275 kb on + strand, within Shew_0638 at 728.308 kb on + strand, within Shew_0638 at 728.391 kb on + strand, within Shew_0638 at 728.391 kb on + strand, within Shew_0638 at 728.399 kb on - strand, within Shew_0638 at 728.820 kb on + strand at 728.828 kb on + strand at 729.145 kb on + strand, within Shew_0639 at 729.365 kb on + strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.373 kb on - strand, within Shew_0639 at 729.465 kb on - strand, within Shew_0639 at 729.470 kb on + strand, within Shew_0639 at 729.504 kb on - strand, within Shew_0639 at 729.792 kb on - strand, within Shew_0640
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 723,662 - Shew_0636 0.77 +0.4 723,755 + +0.9 724,451 + -0.0 724,496 + -0.7 724,676 + +0.4 725,197 - Shew_0638 0.13 -0.0 725,327 + Shew_0638 0.16 +0.5 725,440 + Shew_0638 0.19 -3.1 725,497 + Shew_0638 0.20 +0.0 726,047 - Shew_0638 0.33 +0.4 726,099 - Shew_0638 0.34 +0.4 726,118 - Shew_0638 0.35 -0.3 726,179 + Shew_0638 0.36 +0.5 726,203 + Shew_0638 0.37 +0.7 726,282 + Shew_0638 0.39 +0.4 727,254 + Shew_0638 0.62 +0.1 727,411 + Shew_0638 0.65 +2.9 727,428 + Shew_0638 0.66 +0.7 727,445 - Shew_0638 0.66 +0.0 727,544 - Shew_0638 0.68 -0.7 727,558 + Shew_0638 0.69 -0.9 728,078 - Shew_0638 0.81 +0.2 728,085 - Shew_0638 0.81 -2.6 728,273 - Shew_0638 0.86 +0.2 728,273 - Shew_0638 0.86 -0.3 728,275 + Shew_0638 0.86 -0.9 728,308 + Shew_0638 0.86 -0.4 728,391 + Shew_0638 0.88 -0.3 728,391 + Shew_0638 0.88 -0.4 728,399 - Shew_0638 0.89 +0.2 728,820 + -1.3 728,828 + +0.8 729,145 + Shew_0639 0.29 -0.7 729,365 + Shew_0639 0.63 -0.9 729,373 - Shew_0639 0.64 +2.8 729,373 - Shew_0639 0.64 +0.3 729,373 - Shew_0639 0.64 -0.3 729,373 - Shew_0639 0.64 -1.1 729,373 - Shew_0639 0.64 -0.1 729,465 - Shew_0639 0.78 -0.3 729,470 + Shew_0639 0.79 -4.0 729,504 - Shew_0639 0.84 +0.2 729,792 - Shew_0640 0.32 +0.1
Or see this region's nucleotide sequence