Strain Fitness in Shewanella loihica PV-4 around Shew_0618

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0617 and Shew_0618 are separated by 24 nucleotidesShew_0618 and Shew_0619 are separated by 253 nucleotides Shew_0617: Shew_0617 - phosphate transporter (RefSeq), at 701,995 to 703,263 _0617 Shew_0618: Shew_0618 - hypothetical protein (RefSeq), at 703,288 to 703,968 _0618 Shew_0619: Shew_0619 - adenylate cyclase (RefSeq), at 704,222 to 705,709 _0619 Position (kb) 703 704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 702.928 kb on + strand, within Shew_0617at 703.311 kb on - strandat 703.420 kb on - strand, within Shew_0618at 703.524 kb on - strand, within Shew_0618at 703.888 kb on + strand, within Shew_0618at 704.030 kb on - strandat 704.030 kb on - strandat 704.273 kb on + strandat 704.295 kb on - strandat 704.303 kb on - strandat 704.373 kb on - strand, within Shew_0619at 704.680 kb on + strand, within Shew_0619at 704.883 kb on + strand, within Shew_0619

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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702,928 + Shew_0617 0.74 -1.9
703,311 - +0.6
703,420 - Shew_0618 0.19 -1.7
703,524 - Shew_0618 0.35 -2.6
703,888 + Shew_0618 0.88 -1.9
704,030 - -1.9
704,030 - -3.9
704,273 + -2.7
704,295 - -0.3
704,303 - -0.5
704,373 - Shew_0619 0.10 -0.7
704,680 + Shew_0619 0.31 -0.0
704,883 + Shew_0619 0.44 -0.2

Or see this region's nucleotide sequence