Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0608 and Shew_0609 are separated by 290 nucleotides Shew_0609 and Shew_0610 are separated by 203 nucleotides
Shew_0608: Shew_0608 - molybdopterin oxidoreductase (RefSeq), at 686,458 to 688,740
_0608
Shew_0609: Shew_0609 - two component LuxR family transcriptional regulator (RefSeq), at 689,031 to 689,630
_0609
Shew_0610: Shew_0610 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 689,834 to 691,714
_0610
Position (kb) 689
690 Strain fitness (log2 ratio) -2
-1
0
1 at 688.335 kb on + strand, within Shew_0608 at 688.449 kb on + strand, within Shew_0608 at 688.465 kb on + strand, within Shew_0608 at 688.470 kb on + strand, within Shew_0608 at 688.624 kb on + strand at 688.779 kb on - strand at 688.869 kb on + strand at 689.090 kb on + strand at 689.198 kb on + strand, within Shew_0609 at 689.392 kb on - strand, within Shew_0609 at 689.549 kb on + strand, within Shew_0609 at 689.557 kb on - strand, within Shew_0609 at 689.679 kb on + strand at 689.687 kb on - strand at 689.808 kb on - strand at 690.174 kb on + strand, within Shew_0610 at 690.496 kb on + strand, within Shew_0610 at 690.496 kb on + strand, within Shew_0610 at 690.504 kb on - strand, within Shew_0610 at 690.612 kb on - strand, within Shew_0610
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 688,335 + Shew_0608 0.82 +0.2 688,449 + Shew_0608 0.87 -1.0 688,465 + Shew_0608 0.88 +0.9 688,470 + Shew_0608 0.88 +0.4 688,624 + -0.8 688,779 - -1.9 688,869 + -0.2 689,090 + +1.1 689,198 + Shew_0609 0.28 +0.4 689,392 - Shew_0609 0.60 +0.2 689,549 + Shew_0609 0.86 +0.6 689,557 - Shew_0609 0.88 +0.9 689,679 + +1.6 689,687 - +0.5 689,808 - -0.9 690,174 + Shew_0610 0.18 +0.9 690,496 + Shew_0610 0.35 -0.9 690,496 + Shew_0610 0.35 +0.3 690,504 - Shew_0610 0.36 +0.2 690,612 - Shew_0610 0.41 +1.1
Or see this region's nucleotide sequence