Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0574 and Shew_0575 are separated by 205 nucleotides Shew_0575 and Shew_0576 are separated by 170 nucleotides Shew_0576 and Shew_0577 are separated by 110 nucleotides
Shew_0574: Shew_0574 - ClpXP protease specificity-enhancing factor (RefSeq), at 649,416 to 649,874
_0574
Shew_0575: Shew_0575 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 650,080 to 650,667
_0575
Shew_0576: Shew_0576 - peptidase S9 prolyl oligopeptidase (RefSeq), at 650,838 to 653,324
_0576
Shew_0577: Shew_0577 - putative signal transduction protein (RefSeq), at 653,435 to 654,580
_0577
Position (kb) 650
651
652
653
654 Strain fitness (log2 ratio) -1
0
1 at 649.945 kb on - strand at 650.553 kb on - strand, within Shew_0575 at 650.615 kb on + strand at 651.189 kb on + strand, within Shew_0576 at 651.272 kb on - strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.576 kb on + strand, within Shew_0576 at 651.599 kb on + strand, within Shew_0576 at 651.893 kb on + strand, within Shew_0576 at 652.081 kb on - strand, within Shew_0576 at 652.227 kb on + strand, within Shew_0576 at 652.279 kb on - strand, within Shew_0576 at 652.444 kb on + strand, within Shew_0576 at 652.444 kb on + strand, within Shew_0576 at 653.013 kb on + strand, within Shew_0576 at 653.112 kb on + strand at 653.137 kb on + strand at 653.392 kb on + strand at 654.024 kb on - strand, within Shew_0577 at 654.027 kb on + strand, within Shew_0577 at 654.035 kb on - strand, within Shew_0577 at 654.035 kb on - strand, within Shew_0577 at 654.118 kb on - strand, within Shew_0577 at 654.162 kb on - strand, within Shew_0577 at 654.308 kb on - strand, within Shew_0577
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 649,945 - +1.7 650,553 - Shew_0575 0.80 +0.9 650,615 + -0.9 651,189 + Shew_0576 0.14 +0.4 651,272 - Shew_0576 0.17 +1.2 651,434 + Shew_0576 0.24 +0.8 651,434 + Shew_0576 0.24 +0.3 651,434 + Shew_0576 0.24 +1.1 651,576 + Shew_0576 0.30 +0.4 651,599 + Shew_0576 0.31 +0.5 651,893 + Shew_0576 0.42 +0.6 652,081 - Shew_0576 0.50 +0.3 652,227 + Shew_0576 0.56 -0.4 652,279 - Shew_0576 0.58 +0.6 652,444 + Shew_0576 0.65 -0.9 652,444 + Shew_0576 0.65 +0.9 653,013 + Shew_0576 0.87 +0.4 653,112 + +0.2 653,137 + -0.3 653,392 + -0.4 654,024 - Shew_0577 0.51 +0.9 654,027 + Shew_0577 0.52 +0.9 654,035 - Shew_0577 0.52 +0.2 654,035 - Shew_0577 0.52 +0.5 654,118 - Shew_0577 0.60 +0.9 654,162 - Shew_0577 0.63 -0.5 654,308 - Shew_0577 0.76 -0.6
Or see this region's nucleotide sequence