Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0524 and Shew_0525 are separated by 73 nucleotides Shew_0525 and Shew_0526 are separated by 31 nucleotides Shew_0526 and Shew_0527 are separated by 42 nucleotides Shew_0527 and Shew_0528 are separated by 94 nucleotides Shew_0528 and Shew_0529 are separated by 79 nucleotides
Shew_0524: Shew_0524 - cytochrome c, class I (RefSeq), at 594,644 to 595,705
_0524
Shew_0525: Shew_0525 - hypothetical protein (RefSeq), at 595,779 to 596,003
_0525
Shew_0526: Shew_0526 - hypothetical protein (RefSeq), at 596,035 to 596,406
_0526
Shew_0527: Shew_0527 - Sel1 domain-containing protein (RefSeq), at 596,449 to 597,303
_0527
Shew_0528: Shew_0528 - Sel1 domain-containing protein (RefSeq), at 597,398 to 598,222
_0528
Shew_0529: Shew_0529 - Sel1 domain-containing protein (RefSeq), at 598,302 to 599,129
_0529
Position (kb) 596
597
598 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 595.488 kb on - strand, within Shew_0524 at 595.492 kb on + strand, within Shew_0524 at 595.492 kb on + strand, within Shew_0524 at 595.492 kb on + strand, within Shew_0524 at 595.500 kb on - strand, within Shew_0524 at 595.500 kb on + strand, within Shew_0524 at 595.500 kb on - strand, within Shew_0524 at 595.530 kb on - strand, within Shew_0524 at 595.708 kb on - strand at 595.727 kb on - strand at 595.762 kb on - strand at 596.090 kb on + strand, within Shew_0526 at 596.151 kb on + strand, within Shew_0526 at 596.273 kb on + strand, within Shew_0526 at 596.376 kb on + strand at 596.464 kb on + strand at 596.543 kb on + strand, within Shew_0527 at 596.690 kb on - strand, within Shew_0527 at 596.791 kb on - strand, within Shew_0527 at 596.801 kb on - strand, within Shew_0527 at 596.891 kb on - strand, within Shew_0527 at 596.917 kb on - strand, within Shew_0527 at 597.029 kb on + strand, within Shew_0527 at 597.029 kb on + strand, within Shew_0527 at 597.226 kb on - strand at 597.236 kb on + strand at 597.444 kb on - strand at 597.450 kb on - strand at 597.887 kb on - strand, within Shew_0528 at 597.945 kb on + strand, within Shew_0528 at 597.953 kb on - strand, within Shew_0528 at 597.992 kb on - strand, within Shew_0528 at 598.180 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 595,488 - Shew_0524 0.79 -1.2 595,492 + Shew_0524 0.80 +0.8 595,492 + Shew_0524 0.80 +1.3 595,492 + Shew_0524 0.80 +0.3 595,500 - Shew_0524 0.81 +0.1 595,500 + Shew_0524 0.81 +1.1 595,500 - Shew_0524 0.81 -1.1 595,530 - Shew_0524 0.83 +0.3 595,708 - +1.2 595,727 - +0.1 595,762 - -2.8 596,090 + Shew_0526 0.15 +0.5 596,151 + Shew_0526 0.31 +0.2 596,273 + Shew_0526 0.64 +0.6 596,376 + -0.1 596,464 + +0.5 596,543 + Shew_0527 0.11 -0.6 596,690 - Shew_0527 0.28 +0.2 596,791 - Shew_0527 0.40 +0.2 596,801 - Shew_0527 0.41 -2.3 596,891 - Shew_0527 0.52 -1.6 596,917 - Shew_0527 0.55 -0.3 597,029 + Shew_0527 0.68 -0.2 597,029 + Shew_0527 0.68 +0.0 597,226 - -1.8 597,236 + +1.2 597,444 - +0.7 597,450 - +0.9 597,887 - Shew_0528 0.59 +1.6 597,945 + Shew_0528 0.66 +0.4 597,953 - Shew_0528 0.67 -0.5 597,992 - Shew_0528 0.72 -0.8 598,180 + -0.1
Or see this region's nucleotide sequence