Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0502 and Shew_0503 are separated by 5 nucleotides Shew_0503 and Shew_0504 are separated by 264 nucleotides Shew_0504 and Shew_0505 are separated by 56 nucleotides
Shew_0502: Shew_0502 - hypothetical protein (RefSeq), at 560,738 to 561,265
_0502
Shew_0503: Shew_0503 - thioredoxin domain-containing protein (RefSeq), at 561,271 to 561,612
_0503
Shew_0504: Shew_0504 - NnrS family protein (RefSeq), at 561,877 to 563,088
_0504
Shew_0505: Shew_0505 - nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 563,145 to 564,503
_0505
Position (kb) 561
562
563
564 Strain fitness (log2 ratio) -1
0
1 at 561.393 kb on - strand, within Shew_0503 at 561.401 kb on - strand, within Shew_0503 at 561.615 kb on + strand at 561.621 kb on + strand at 561.623 kb on - strand at 561.678 kb on - strand at 561.805 kb on + strand at 561.808 kb on - strand at 561.808 kb on - strand at 561.808 kb on - strand at 561.808 kb on - strand at 562.331 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.746 kb on - strand, within Shew_0504 at 562.847 kb on + strand, within Shew_0504 at 562.872 kb on - strand, within Shew_0504 at 563.274 kb on + strand at 563.369 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.607 kb on + strand, within Shew_0505 at 563.831 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.977 kb on - strand, within Shew_0505 at 563.988 kb on - strand, within Shew_0505
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 561,393 - Shew_0503 0.36 +0.2 561,401 - Shew_0503 0.38 -0.3 561,615 + -0.3 561,621 + +0.7 561,623 - +0.5 561,678 - -1.3 561,805 + +0.1 561,808 - +0.3 561,808 - -0.3 561,808 - +0.1 561,808 - +0.2 562,331 + Shew_0504 0.37 +0.7 562,518 + Shew_0504 0.53 -0.2 562,518 + Shew_0504 0.53 +0.3 562,746 - Shew_0504 0.72 +0.5 562,847 + Shew_0504 0.80 +0.4 562,872 - Shew_0504 0.82 +0.9 563,274 + -0.1 563,369 + Shew_0505 0.16 +0.0 563,404 + Shew_0505 0.19 -0.3 563,404 + Shew_0505 0.19 +0.6 563,404 + Shew_0505 0.19 -0.1 563,607 + Shew_0505 0.34 +0.6 563,831 + Shew_0505 0.50 +0.8 563,969 + Shew_0505 0.61 -0.1 563,969 + Shew_0505 0.61 -0.7 563,977 - Shew_0505 0.61 +0.1 563,988 - Shew_0505 0.62 -0.5
Or see this region's nucleotide sequence