Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0429 and Shew_0430 are separated by 239 nucleotides Shew_0430 and Shew_0431 are separated by 254 nucleotides Shew_0431 and Shew_0432 are separated by 285 nucleotides Shew_0432 and Shew_0433 are separated by 21 nucleotides
Shew_0429: Shew_0429 - hypothetical protein (RefSeq), at 482,008 to 482,700
_0429
Shew_0430: Shew_0430 - histone family protein DNA-binding protein (RefSeq), at 482,940 to 483,212
_0430
Shew_0431: Shew_0431 - hypothetical protein (RefSeq), at 483,467 to 483,877
_0431
Shew_0432: Shew_0432 - hypothetical protein (RefSeq), at 484,163 to 484,672
_0432
Shew_0433: Shew_0433 - hypothetical protein (RefSeq), at 484,694 to 485,083
_0433
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.681 kb on - strand at 482.681 kb on - strand at 482.727 kb on + strand at 483.151 kb on + strand, within Shew_0430 at 483.465 kb on + strand at 483.473 kb on - strand at 483.479 kb on - strand at 483.549 kb on + strand, within Shew_0431 at 483.595 kb on + strand, within Shew_0431 at 483.623 kb on - strand, within Shew_0431 at 483.685 kb on - strand, within Shew_0431 at 483.709 kb on + strand, within Shew_0431 at 483.777 kb on - strand, within Shew_0431 at 483.778 kb on + strand, within Shew_0431 at 483.909 kb on + strand at 484.111 kb on - strand at 484.237 kb on + strand, within Shew_0432 at 484.417 kb on + strand, within Shew_0432 at 484.585 kb on + strand, within Shew_0432 at 484.774 kb on + strand, within Shew_0433 at 484.781 kb on - strand, within Shew_0433
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 482,681 - +0.9 482,681 - -1.3 482,727 + -2.7 483,151 + Shew_0430 0.77 +1.9 483,465 + +1.9 483,473 - +0.7 483,479 - -0.3 483,549 + Shew_0431 0.20 +0.4 483,595 + Shew_0431 0.31 +0.1 483,623 - Shew_0431 0.38 +0.3 483,685 - Shew_0431 0.53 +1.3 483,709 + Shew_0431 0.59 -2.3 483,777 - Shew_0431 0.75 -1.7 483,778 + Shew_0431 0.76 +0.2 483,909 + -2.3 484,111 - +0.7 484,237 + Shew_0432 0.15 +0.5 484,417 + Shew_0432 0.50 +1.7 484,585 + Shew_0432 0.83 -0.4 484,774 + Shew_0433 0.21 +0.3 484,781 - Shew_0433 0.22 -0.3
Or see this region's nucleotide sequence