Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0426 and Shew_0427 overlap by 1 nucleotides Shew_0427 and Shew_0428 are separated by 230 nucleotides Shew_0428 and Shew_0429 are separated by 328 nucleotides
Shew_0426: Shew_0426 - ABC transporter-related protein (RefSeq), at 479,300 to 480,322
_0426
Shew_0427: Shew_0427 - hypothetical protein (RefSeq), at 480,322 to 481,275
_0427
Shew_0428: Shew_0428 - hypothetical protein (RefSeq), at 481,506 to 481,679
_0428
Shew_0429: Shew_0429 - hypothetical protein (RefSeq), at 482,008 to 482,700
_0429
Position (kb) 480
481
482 Strain fitness (log2 ratio) -1
0
1 at 479.469 kb on + strand, within Shew_0426 at 479.471 kb on - strand, within Shew_0426 at 480.330 kb on + strand at 480.361 kb on + strand at 480.369 kb on - strand at 480.660 kb on - strand, within Shew_0427 at 480.798 kb on - strand, within Shew_0427 at 480.861 kb on + strand, within Shew_0427 at 481.020 kb on - strand, within Shew_0427 at 481.176 kb on + strand, within Shew_0427 at 481.422 kb on - strand at 481.505 kb on - strand at 481.726 kb on + strand at 481.859 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 479,469 + Shew_0426 0.17 +0.6 479,471 - Shew_0426 0.17 +0.2 480,330 + +0.6 480,361 + +0.1 480,369 - +0.0 480,660 - Shew_0427 0.35 -0.3 480,798 - Shew_0427 0.50 +1.1 480,861 + Shew_0427 0.56 -0.1 481,020 - Shew_0427 0.73 +0.2 481,176 + Shew_0427 0.90 +0.7 481,422 - -1.0 481,505 - +0.1 481,726 + -1.7 481,859 + +0.2
Or see this region's nucleotide sequence