Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0383 and Shew_0384 are separated by 174 nucleotides Shew_0384 and Shew_0385 are separated by 236 nucleotides
Shew_0383: Shew_0383 - malate dehydrogenase (RefSeq), at 432,685 to 433,932
_0383
Shew_0384: Shew_0384 - regulatory protein CsrD (RefSeq), at 434,107 to 436,017
_0384
Shew_0385: Shew_0385 - biogenesis protein MshI (RefSeq), at 436,254 to 437,132
_0385
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.246 kb on + strand, within Shew_0383 at 433.254 kb on - strand, within Shew_0383 at 433.498 kb on + strand, within Shew_0383 at 433.817 kb on + strand at 433.875 kb on - strand at 433.901 kb on + strand at 433.909 kb on - strand at 434.583 kb on + strand, within Shew_0384 at 434.662 kb on + strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.908 kb on - strand, within Shew_0384 at 435.242 kb on + strand, within Shew_0384 at 435.398 kb on + strand, within Shew_0384 at 435.398 kb on + strand, within Shew_0384 at 435.444 kb on + strand, within Shew_0384 at 435.452 kb on - strand, within Shew_0384 at 435.565 kb on - strand, within Shew_0384 at 435.792 kb on - strand, within Shew_0384 at 435.971 kb on + strand at 435.979 kb on - strand at 436.052 kb on + strand at 436.664 kb on + strand, within Shew_0385 at 436.664 kb on + strand, within Shew_0385 at 436.886 kb on - strand, within Shew_0385
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 433,246 + Shew_0383 0.45 +1.5 433,254 - Shew_0383 0.46 -0.9 433,498 + Shew_0383 0.65 +1.2 433,817 + +1.6 433,875 - -2.3 433,901 + +0.2 433,909 - -0.3 434,583 + Shew_0384 0.25 -2.0 434,662 + Shew_0384 0.29 -1.4 434,670 - Shew_0384 0.29 -2.1 434,670 - Shew_0384 0.29 -2.5 434,908 - Shew_0384 0.42 -1.4 435,242 + Shew_0384 0.59 -1.9 435,398 + Shew_0384 0.68 -3.3 435,398 + Shew_0384 0.68 -1.5 435,444 + Shew_0384 0.70 -0.6 435,452 - Shew_0384 0.70 -3.0 435,565 - Shew_0384 0.76 -1.3 435,792 - Shew_0384 0.88 -0.3 435,971 + -2.0 435,979 - -2.4 436,052 + -0.3 436,664 + Shew_0385 0.47 +0.3 436,664 + Shew_0385 0.47 +0.2 436,886 - Shew_0385 0.72 -0.7
Or see this region's nucleotide sequence