Strain Fitness in Shewanella loihica PV-4 around Shew_0379

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargS and Shew_0379 are separated by 122 nucleotidesShew_0379 and Shew_0380 are separated by 265 nucleotides Shew_0378: argS - arginyl-tRNA synthetase (RefSeq), at 426,010 to 427,755 argS Shew_0379: Shew_0379 - primosomal protein N' (RefSeq), at 427,878 to 430,073 _0379 Shew_0380: Shew_0380 - hypothetical protein (RefSeq), at 430,339 to 431,115 _0380 Position (kb) 427 428 429 430 431Strain fitness (log2 ratio) -2 -1 0 1at 430.238 kb on + strandat 430.272 kb on + strandat 430.278 kb on + strandat 430.286 kb on - strandat 430.286 kb on - strandat 430.376 kb on - strandat 430.611 kb on + strand, within Shew_0380at 430.797 kb on - strand, within Shew_0380

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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430,238 + -0.3
430,272 + +0.7
430,278 + -0.8
430,286 - -2.3
430,286 - +0.3
430,376 - +0.9
430,611 + Shew_0380 0.35 +0.5
430,797 - Shew_0380 0.59 -0.7

Or see this region's nucleotide sequence