Strain Fitness in Shewanella loihica PV-4 around Shew_0257

Experiment: Cisplatin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0256 and Shew_0257 are separated by 135 nucleotidesShew_0257 and Shew_0258 are separated by 101 nucleotides Shew_0256: Shew_0256 - hypothetical protein (RefSeq), at 274,860 to 275,438 _0256 Shew_0257: Shew_0257 - peptidase S9 prolyl oligopeptidase (RefSeq), at 275,574 to 277,652 _0257 Shew_0258: Shew_0258 - hypothetical protein (RefSeq), at 277,754 to 278,701 _0258 Position (kb) 275 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1at 274.593 kb on + strandat 274.608 kb on - strandat 274.629 kb on - strandat 274.650 kb on - strandat 274.650 kb on - strandat 274.655 kb on + strandat 274.745 kb on - strandat 274.746 kb on + strandat 275.142 kb on - strand, within Shew_0256at 275.142 kb on - strand, within Shew_0256at 275.617 kb on + strandat 275.646 kb on - strandat 275.672 kb on - strandat 275.683 kb on + strandat 275.719 kb on - strandat 275.850 kb on - strand, within Shew_0257at 275.902 kb on - strand, within Shew_0257at 276.164 kb on + strand, within Shew_0257at 276.365 kb on + strand, within Shew_0257at 276.373 kb on - strand, within Shew_0257at 276.462 kb on - strand, within Shew_0257at 276.525 kb on + strand, within Shew_0257at 276.532 kb on - strand, within Shew_0257at 276.532 kb on - strand, within Shew_0257at 276.568 kb on - strand, within Shew_0257at 276.705 kb on - strand, within Shew_0257at 276.901 kb on + strand, within Shew_0257at 276.909 kb on - strand, within Shew_0257at 276.909 kb on - strand, within Shew_0257at 277.028 kb on + strand, within Shew_0257at 277.028 kb on + strand, within Shew_0257at 277.028 kb on + strand, within Shew_0257at 277.078 kb on + strand, within Shew_0257at 277.254 kb on + strand, within Shew_0257at 277.264 kb on + strand, within Shew_0257at 277.272 kb on + strand, within Shew_0257at 277.356 kb on + strand, within Shew_0257at 277.506 kb on + strandat 277.598 kb on - strandat 277.894 kb on + strand, within Shew_0258at 278.082 kb on - strand, within Shew_0258at 278.084 kb on + strand, within Shew_0258at 278.084 kb on + strand, within Shew_0258at 278.092 kb on - strand, within Shew_0258at 278.092 kb on - strand, within Shew_0258at 278.187 kb on + strand, within Shew_0258at 278.187 kb on + strand, within Shew_0258at 278.195 kb on - strand, within Shew_0258at 278.453 kb on - strand, within Shew_0258at 278.453 kb on - strand, within Shew_0258at 278.562 kb on - strand, within Shew_0258at 278.562 kb on - strand, within Shew_0258at 278.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml
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274,593 + -1.3
274,608 - +0.4
274,629 - -1.0
274,650 - +0.5
274,650 - -1.4
274,655 + +1.4
274,745 - +0.6
274,746 + -0.2
275,142 - Shew_0256 0.49 -0.4
275,142 - Shew_0256 0.49 +0.4
275,617 + +0.4
275,646 - +0.4
275,672 - +1.2
275,683 + -0.3
275,719 - -1.0
275,850 - Shew_0257 0.13 -0.8
275,902 - Shew_0257 0.16 -3.0
276,164 + Shew_0257 0.28 +0.4
276,365 + Shew_0257 0.38 -1.2
276,373 - Shew_0257 0.38 -2.0
276,462 - Shew_0257 0.43 -0.2
276,525 + Shew_0257 0.46 +0.4
276,532 - Shew_0257 0.46 +0.2
276,532 - Shew_0257 0.46 +0.7
276,568 - Shew_0257 0.48 -0.8
276,705 - Shew_0257 0.54 -0.7
276,901 + Shew_0257 0.64 -0.1
276,909 - Shew_0257 0.64 -1.6
276,909 - Shew_0257 0.64 +0.5
277,028 + Shew_0257 0.70 +1.1
277,028 + Shew_0257 0.70 -0.8
277,028 + Shew_0257 0.70 +0.3
277,078 + Shew_0257 0.72 +0.3
277,254 + Shew_0257 0.81 -1.6
277,264 + Shew_0257 0.81 -1.1
277,272 + Shew_0257 0.82 -0.1
277,356 + Shew_0257 0.86 +0.3
277,506 + +0.6
277,598 - -0.8
277,894 + Shew_0258 0.15 -0.3
278,082 - Shew_0258 0.35 +0.4
278,084 + Shew_0258 0.35 -1.0
278,084 + Shew_0258 0.35 +0.3
278,092 - Shew_0258 0.36 -0.4
278,092 - Shew_0258 0.36 -1.7
278,187 + Shew_0258 0.46 +0.0
278,187 + Shew_0258 0.46 +0.0
278,195 - Shew_0258 0.47 -2.0
278,453 - Shew_0258 0.74 +0.4
278,453 - Shew_0258 0.74 -1.0
278,562 - Shew_0258 0.85 +0.3
278,562 - Shew_0258 0.85 +0.5
278,613 + +0.8

Or see this region's nucleotide sequence