Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0252 and Shew_0253 overlap by 11 nucleotides Shew_0253 and Shew_0254 are separated by 19 nucleotides Shew_0254 and Shew_0255 are separated by 131 nucleotides
Shew_0252: Shew_0252 - hypothetical protein (RefSeq), at 270,902 to 271,894
_0252
Shew_0253: Shew_0253 - secretion protein HlyD family protein (RefSeq), at 271,884 to 272,990
_0253
Shew_0254: Shew_0254 - hypothetical protein (RefSeq), at 273,010 to 273,519
_0254
Shew_0255: Shew_0255 - ion transport 2 domain-containing protein (RefSeq), at 273,651 to 274,331
_0255
Position (kb) 271
272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 270.908 kb on - strand at 270.955 kb on - strand at 270.955 kb on - strand at 271.000 kb on + strand at 271.015 kb on + strand, within Shew_0252 at 271.068 kb on + strand, within Shew_0252 at 271.069 kb on + strand, within Shew_0252 at 271.132 kb on + strand, within Shew_0252 at 271.140 kb on + strand, within Shew_0252 at 271.188 kb on + strand, within Shew_0252 at 271.196 kb on - strand, within Shew_0252 at 271.204 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.212 kb on - strand, within Shew_0252 at 271.217 kb on - strand, within Shew_0252 at 271.217 kb on - strand, within Shew_0252 at 271.231 kb on - strand, within Shew_0252 at 271.303 kb on + strand, within Shew_0252 at 271.320 kb on + strand, within Shew_0252 at 271.338 kb on - strand, within Shew_0252 at 271.464 kb on - strand, within Shew_0252 at 271.510 kb on + strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.564 kb on - strand, within Shew_0252 at 271.604 kb on + strand, within Shew_0252 at 271.612 kb on + strand, within Shew_0252 at 271.657 kb on - strand, within Shew_0252 at 271.810 kb on - strand at 271.810 kb on - strand at 271.894 kb on - strand at 271.958 kb on - strand at 271.963 kb on - strand at 271.977 kb on + strand at 271.979 kb on - strand at 272.162 kb on + strand, within Shew_0253 at 272.279 kb on - strand, within Shew_0253 at 272.631 kb on - strand, within Shew_0253 at 272.669 kb on - strand, within Shew_0253 at 272.757 kb on - strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.886 kb on - strand at 272.952 kb on + strand at 272.957 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.965 kb on - strand at 272.967 kb on + strand at 272.967 kb on + strand at 272.970 kb on - strand at 272.972 kb on + strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 273.133 kb on + strand, within Shew_0254 at 273.153 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.190 kb on + strand, within Shew_0254 at 273.227 kb on + strand, within Shew_0254 at 273.249 kb on + strand, within Shew_0254 at 273.313 kb on - strand, within Shew_0254 at 273.372 kb on + strand, within Shew_0254 at 273.389 kb on + strand, within Shew_0254 at 273.398 kb on - strand, within Shew_0254 at 273.407 kb on - strand, within Shew_0254 at 273.412 kb on + strand, within Shew_0254 at 273.445 kb on + strand, within Shew_0254 at 273.446 kb on - strand, within Shew_0254 at 273.514 kb on + strand at 273.514 kb on + strand at 273.514 kb on - strand at 273.519 kb on + strand at 273.521 kb on - strand at 273.527 kb on + strand at 273.527 kb on - strand at 273.585 kb on - strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.618 kb on - strand at 273.618 kb on - strand at 273.623 kb on - strand at 273.624 kb on + strand at 273.632 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.642 kb on - strand at 273.642 kb on - strand at 273.649 kb on - strand at 273.667 kb on - strand at 273.689 kb on + strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.746 kb on + strand, within Shew_0255 at 273.749 kb on - strand, within Shew_0255 at 273.756 kb on + strand, within Shew_0255 at 273.769 kb on - strand, within Shew_0255 at 273.801 kb on - strand, within Shew_0255 at 273.825 kb on - strand, within Shew_0255 at 273.872 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.875 kb on + strand, within Shew_0255 at 273.921 kb on + strand, within Shew_0255 at 273.931 kb on + strand, within Shew_0255 at 273.940 kb on - strand, within Shew_0255 at 273.970 kb on - strand, within Shew_0255
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 270,908 - +0.0 270,955 - +0.1 270,955 - +0.5 271,000 + +0.9 271,015 + Shew_0252 0.11 +1.3 271,068 + Shew_0252 0.17 +0.6 271,069 + Shew_0252 0.17 -0.1 271,132 + Shew_0252 0.23 -1.3 271,140 + Shew_0252 0.24 +1.0 271,188 + Shew_0252 0.29 +0.1 271,196 - Shew_0252 0.30 -0.0 271,204 + Shew_0252 0.30 +0.1 271,209 + Shew_0252 0.31 -1.8 271,209 + Shew_0252 0.31 +0.2 271,209 + Shew_0252 0.31 -0.0 271,212 - Shew_0252 0.31 -2.3 271,217 - Shew_0252 0.32 +0.6 271,217 - Shew_0252 0.32 +0.3 271,231 - Shew_0252 0.33 +0.4 271,303 + Shew_0252 0.40 +0.6 271,320 + Shew_0252 0.42 +0.5 271,338 - Shew_0252 0.44 +0.3 271,464 - Shew_0252 0.57 +0.2 271,510 + Shew_0252 0.61 -0.3 271,518 - Shew_0252 0.62 -2.2 271,518 - Shew_0252 0.62 +0.0 271,518 - Shew_0252 0.62 +1.1 271,518 - Shew_0252 0.62 +0.6 271,518 - Shew_0252 0.62 -0.3 271,518 - Shew_0252 0.62 +0.0 271,564 - Shew_0252 0.67 +1.3 271,604 + Shew_0252 0.71 +0.6 271,612 + Shew_0252 0.72 -2.2 271,657 - Shew_0252 0.76 +0.0 271,810 - +0.1 271,810 - -0.0 271,894 - +0.2 271,958 - +0.5 271,963 - +3.1 271,977 + +0.3 271,979 - +0.8 272,162 + Shew_0253 0.25 +0.5 272,279 - Shew_0253 0.36 +0.3 272,631 - Shew_0253 0.67 +0.6 272,669 - Shew_0253 0.71 -0.1 272,757 - Shew_0253 0.79 +0.6 272,801 + Shew_0253 0.83 -0.1 272,801 + Shew_0253 0.83 +1.0 272,809 - Shew_0253 0.84 +1.1 272,809 - Shew_0253 0.84 +0.8 272,886 - +0.2 272,952 + -1.0 272,957 + -0.2 272,962 + +0.1 272,962 + +0.3 272,962 + -0.2 272,965 - +0.2 272,967 + +1.8 272,967 + +0.3 272,970 - +0.3 272,972 + +0.2 272,975 - +2.1 272,975 - -0.1 272,975 - +0.7 272,975 - +1.4 272,975 - -0.2 272,975 - +0.1 272,975 - +0.0 273,133 + Shew_0254 0.24 -0.3 273,153 + Shew_0254 0.28 +0.9 273,163 + Shew_0254 0.30 +1.7 273,163 + Shew_0254 0.30 +0.5 273,166 - Shew_0254 0.31 +0.6 273,166 - Shew_0254 0.31 -0.1 273,171 - Shew_0254 0.32 -0.0 273,171 - Shew_0254 0.32 -0.7 273,190 + Shew_0254 0.35 -0.8 273,227 + Shew_0254 0.43 +0.1 273,249 + Shew_0254 0.47 -0.1 273,313 - Shew_0254 0.59 +0.7 273,372 + Shew_0254 0.71 +2.4 273,389 + Shew_0254 0.74 -0.2 273,398 - Shew_0254 0.76 +0.1 273,407 - Shew_0254 0.78 +1.1 273,412 + Shew_0254 0.79 +0.6 273,445 + Shew_0254 0.85 +0.9 273,446 - Shew_0254 0.85 -1.8 273,514 + +0.2 273,514 + -2.2 273,514 - +1.1 273,519 + +1.1 273,521 - +1.2 273,527 + +1.2 273,527 - +1.0 273,585 - +0.3 273,598 + +0.9 273,598 + +0.2 273,598 + -0.9 273,598 + -0.6 273,598 + +0.6 273,606 - -0.2 273,606 - +0.4 273,606 - +0.5 273,608 + -0.4 273,608 + -2.8 273,608 + -0.1 273,608 + +0.3 273,608 + -0.4 273,608 + -1.2 273,608 + -0.3 273,608 + +0.2 273,608 + +0.3 273,608 + +0.3 273,608 + -0.8 273,608 + -1.6 273,608 + -0.2 273,608 + -1.6 273,608 + -2.5 273,608 + +0.2 273,608 + -0.3 273,608 + +0.2 273,608 + -0.7 273,616 - -0.0 273,616 - +0.2 273,616 - -0.3 273,616 - +0.5 273,616 - +0.1 273,616 - +0.2 273,616 - -3.0 273,616 - +0.0 273,616 - -1.4 273,616 - -0.4 273,616 - -1.2 273,616 - -0.7 273,616 - +0.1 273,616 - -1.4 273,616 - +0.2 273,616 - -0.3 273,616 - +0.3 273,616 - -0.5 273,616 - -0.4 273,616 - +1.1 273,616 - +1.5 273,616 - -1.7 273,616 - +0.4 273,618 - -0.1 273,618 - -0.0 273,623 - +0.3 273,624 + -1.1 273,632 + +0.0 273,634 + +2.2 273,634 + -0.5 273,634 + -0.4 273,642 - -0.8 273,642 - -2.8 273,649 - -0.4 273,667 - -0.4 273,689 + +3.3 273,697 - +0.0 273,697 - +0.0 273,697 - -0.2 273,722 - Shew_0255 0.10 -4.0 273,722 - Shew_0255 0.10 -0.7 273,722 - Shew_0255 0.10 +1.2 273,746 + Shew_0255 0.14 -0.5 273,749 - Shew_0255 0.14 -1.2 273,756 + Shew_0255 0.15 -0.0 273,769 - Shew_0255 0.17 -0.4 273,801 - Shew_0255 0.22 -0.1 273,825 - Shew_0255 0.26 +0.4 273,872 - Shew_0255 0.32 -0.3 273,873 - Shew_0255 0.33 +2.3 273,873 - Shew_0255 0.33 +1.2 273,875 + Shew_0255 0.33 -1.5 273,921 + Shew_0255 0.40 +0.7 273,931 + Shew_0255 0.41 +2.8 273,940 - Shew_0255 0.42 +0.0 273,970 - Shew_0255 0.47 +1.2
Or see this region's nucleotide sequence