Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0250 and Shew_0251 are separated by 377 nucleotides Shew_0251 and Shew_0252 are separated by 144 nucleotides
Shew_0250: Shew_0250 - MerR family transcriptional regulator (RefSeq), at 268,605 to 269,783
_0250
Shew_0251: Shew_0251 - phage integrase family protein (RefSeq), at 270,161 to 270,757
_0251
Shew_0252: Shew_0252 - hypothetical protein (RefSeq), at 270,902 to 271,894
_0252
Position (kb) 270
271 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 269.180 kb on + strand, within Shew_0250 at 269.334 kb on + strand, within Shew_0250 at 269.413 kb on - strand, within Shew_0250 at 269.423 kb on - strand, within Shew_0250 at 269.423 kb on - strand, within Shew_0250 at 269.600 kb on + strand, within Shew_0250 at 269.600 kb on + strand, within Shew_0250 at 269.608 kb on - strand, within Shew_0250 at 269.608 kb on - strand, within Shew_0250 at 269.619 kb on + strand, within Shew_0250 at 269.708 kb on + strand at 269.794 kb on + strand at 269.827 kb on - strand at 269.834 kb on + strand at 269.834 kb on + strand at 269.852 kb on - strand at 269.899 kb on - strand at 269.986 kb on + strand at 270.053 kb on + strand at 270.065 kb on - strand at 270.095 kb on + strand at 270.275 kb on + strand, within Shew_0251 at 270.283 kb on - strand, within Shew_0251 at 270.295 kb on - strand, within Shew_0251 at 270.332 kb on - strand, within Shew_0251 at 270.353 kb on + strand, within Shew_0251 at 270.446 kb on - strand, within Shew_0251 at 270.511 kb on - strand, within Shew_0251 at 270.620 kb on + strand, within Shew_0251 at 270.723 kb on - strand at 270.734 kb on - strand at 270.802 kb on - strand at 270.808 kb on + strand at 270.816 kb on - strand at 270.845 kb on - strand at 270.874 kb on + strand at 270.908 kb on - strand at 270.955 kb on - strand at 270.955 kb on - strand at 271.000 kb on + strand at 271.015 kb on + strand, within Shew_0252 at 271.068 kb on + strand, within Shew_0252 at 271.069 kb on + strand, within Shew_0252 at 271.132 kb on + strand, within Shew_0252 at 271.140 kb on + strand, within Shew_0252 at 271.188 kb on + strand, within Shew_0252 at 271.196 kb on - strand, within Shew_0252 at 271.204 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.212 kb on - strand, within Shew_0252 at 271.217 kb on - strand, within Shew_0252 at 271.217 kb on - strand, within Shew_0252 at 271.231 kb on - strand, within Shew_0252 at 271.303 kb on + strand, within Shew_0252 at 271.320 kb on + strand, within Shew_0252 at 271.338 kb on - strand, within Shew_0252 at 271.464 kb on - strand, within Shew_0252 at 271.510 kb on + strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.564 kb on - strand, within Shew_0252 at 271.604 kb on + strand, within Shew_0252 at 271.612 kb on + strand, within Shew_0252 at 271.657 kb on - strand, within Shew_0252
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 269,180 + Shew_0250 0.49 -1.0 269,334 + Shew_0250 0.62 -0.1 269,413 - Shew_0250 0.69 +0.6 269,423 - Shew_0250 0.69 +0.3 269,423 - Shew_0250 0.69 -0.1 269,600 + Shew_0250 0.84 -1.4 269,600 + Shew_0250 0.84 +0.3 269,608 - Shew_0250 0.85 -0.3 269,608 - Shew_0250 0.85 +0.1 269,619 + Shew_0250 0.86 -0.4 269,708 + -2.2 269,794 + +0.1 269,827 - +0.7 269,834 + +0.4 269,834 + -0.1 269,852 - +0.7 269,899 - -1.6 269,986 + -0.2 270,053 + +0.0 270,065 - +0.6 270,095 + +0.5 270,275 + Shew_0251 0.19 +1.2 270,283 - Shew_0251 0.20 -4.1 270,295 - Shew_0251 0.22 -2.4 270,332 - Shew_0251 0.29 -1.8 270,353 + Shew_0251 0.32 +0.6 270,446 - Shew_0251 0.48 -1.5 270,511 - Shew_0251 0.59 -0.1 270,620 + Shew_0251 0.77 -0.3 270,723 - +0.1 270,734 - -0.7 270,802 - +0.4 270,808 + -0.2 270,816 - +0.4 270,845 - -0.2 270,874 + +0.2 270,908 - +0.0 270,955 - +0.1 270,955 - +0.5 271,000 + +0.9 271,015 + Shew_0252 0.11 +1.3 271,068 + Shew_0252 0.17 +0.6 271,069 + Shew_0252 0.17 -0.1 271,132 + Shew_0252 0.23 -1.3 271,140 + Shew_0252 0.24 +1.0 271,188 + Shew_0252 0.29 +0.1 271,196 - Shew_0252 0.30 -0.0 271,204 + Shew_0252 0.30 +0.1 271,209 + Shew_0252 0.31 -1.8 271,209 + Shew_0252 0.31 +0.2 271,209 + Shew_0252 0.31 -0.0 271,212 - Shew_0252 0.31 -2.3 271,217 - Shew_0252 0.32 +0.6 271,217 - Shew_0252 0.32 +0.3 271,231 - Shew_0252 0.33 +0.4 271,303 + Shew_0252 0.40 +0.6 271,320 + Shew_0252 0.42 +0.5 271,338 - Shew_0252 0.44 +0.3 271,464 - Shew_0252 0.57 +0.2 271,510 + Shew_0252 0.61 -0.3 271,518 - Shew_0252 0.62 -2.2 271,518 - Shew_0252 0.62 +0.0 271,518 - Shew_0252 0.62 +1.1 271,518 - Shew_0252 0.62 +0.6 271,518 - Shew_0252 0.62 -0.3 271,518 - Shew_0252 0.62 +0.0 271,564 - Shew_0252 0.67 +1.3 271,604 + Shew_0252 0.71 +0.6 271,612 + Shew_0252 0.72 -2.2 271,657 - Shew_0252 0.76 +0.0
Or see this region's nucleotide sequence