Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0189 and Shew_0190 are separated by 11 nucleotides Shew_0190 and Shew_0191 are separated by 332 nucleotides Shew_0191 and Shew_0192 are separated by 191 nucleotides
Shew_0189: Shew_0189 - heme exporter protein CcmB (RefSeq), at 195,435 to 196,121
_0189
Shew_0190: Shew_0190 - cytochrome c biogenesis protein CcmA (RefSeq), at 196,133 to 196,783
_0190
Shew_0191: Shew_0191 - cytochrome c, class I (RefSeq), at 197,116 to 197,409
_0191
Shew_0192: Shew_0192 - TPR repeat-containing protein (RefSeq), at 197,601 to 198,851
_0192
Position (kb) 197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 196.138 kb on - strand at 196.478 kb on + strand, within Shew_0190 at 196.862 kb on + strand at 196.963 kb on + strand at 196.963 kb on + strand at 196.971 kb on - strand at 197.058 kb on - strand at 197.076 kb on + strand at 197.149 kb on + strand, within Shew_0191 at 197.194 kb on + strand, within Shew_0191 at 197.202 kb on - strand, within Shew_0191 at 197.310 kb on - strand, within Shew_0191 at 197.620 kb on - strand at 197.664 kb on + strand at 197.755 kb on - strand, within Shew_0192 at 197.773 kb on - strand, within Shew_0192 at 197.773 kb on - strand, within Shew_0192 at 197.777 kb on + strand, within Shew_0192 at 197.787 kb on + strand, within Shew_0192 at 197.837 kb on + strand, within Shew_0192 at 197.950 kb on + strand, within Shew_0192 at 197.958 kb on - strand, within Shew_0192 at 198.200 kb on - strand, within Shew_0192 at 198.239 kb on - strand, within Shew_0192 at 198.253 kb on - strand, within Shew_0192 at 198.333 kb on + strand, within Shew_0192
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 196,138 - +1.7 196,478 + Shew_0190 0.53 -1.2 196,862 + +0.6 196,963 + -0.6 196,963 + -2.6 196,971 - +1.2 197,058 - -0.9 197,076 + -1.5 197,149 + Shew_0191 0.11 -1.7 197,194 + Shew_0191 0.27 -1.7 197,202 - Shew_0191 0.29 -1.5 197,310 - Shew_0191 0.66 -1.0 197,620 - +0.1 197,664 + -2.2 197,755 - Shew_0192 0.12 +0.6 197,773 - Shew_0192 0.14 +0.8 197,773 - Shew_0192 0.14 +0.6 197,777 + Shew_0192 0.14 +0.7 197,787 + Shew_0192 0.15 -0.6 197,837 + Shew_0192 0.19 -0.0 197,950 + Shew_0192 0.28 +1.4 197,958 - Shew_0192 0.29 -2.2 198,200 - Shew_0192 0.48 +0.5 198,239 - Shew_0192 0.51 +0.5 198,253 - Shew_0192 0.52 -3.5 198,333 + Shew_0192 0.59 +1.4
Or see this region's nucleotide sequence