Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0045 and Shew_0046 are separated by 181 nucleotides Shew_0046 and Shew_0047 are separated by 10 nucleotides Shew_0047 and Shew_0048 are separated by 118 nucleotides
Shew_0045: Shew_0045 - RND family efflux transporter MFP subunit (RefSeq), at 54,917 to 55,987
_0045
Shew_0046: Shew_0046 - molybdenum cofactor synthesis domain-containing protein (RefSeq), at 56,169 to 57,416
_0046
Shew_0047: Shew_0047 - molybdopterin biosynthesis protein MoeB (RefSeq), at 57,427 to 58,194
_0047
Shew_0048: Shew_0048 - short chain dehydrogenase (RefSeq), at 58,313 to 59,020
_0048
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.356 kb on - strand, within Shew_0045 at 55.560 kb on + strand, within Shew_0045 at 55.648 kb on - strand, within Shew_0045 at 55.746 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.749 kb on + strand, within Shew_0045 at 55.757 kb on - strand, within Shew_0045 at 55.798 kb on + strand, within Shew_0045 at 55.891 kb on - strand at 56.100 kb on - strand at 56.100 kb on - strand at 56.418 kb on + strand, within Shew_0046 at 56.517 kb on + strand, within Shew_0046 at 56.698 kb on + strand, within Shew_0046 at 56.717 kb on + strand, within Shew_0046 at 56.725 kb on - strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.185 kb on + strand, within Shew_0046 at 57.193 kb on - strand, within Shew_0046 at 57.193 kb on - strand, within Shew_0046 at 57.285 kb on + strand, within Shew_0046 at 57.285 kb on + strand, within Shew_0046 at 57.300 kb on - strand at 57.361 kb on - strand at 57.390 kb on - strand at 57.400 kb on - strand at 57.500 kb on + strand at 57.525 kb on - strand, within Shew_0047 at 57.565 kb on + strand, within Shew_0047 at 57.696 kb on + strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.704 kb on - strand, within Shew_0047 at 57.752 kb on - strand, within Shew_0047 at 58.002 kb on - strand, within Shew_0047 at 58.399 kb on - strand, within Shew_0048
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 55,356 - Shew_0045 0.41 -0.1 55,560 + Shew_0045 0.60 -0.1 55,648 - Shew_0045 0.68 -2.7 55,746 + Shew_0045 0.77 -0.2 55,749 + Shew_0045 0.78 +0.7 55,749 + Shew_0045 0.78 -0.2 55,749 + Shew_0045 0.78 +0.5 55,757 - Shew_0045 0.78 +0.2 55,798 + Shew_0045 0.82 -0.2 55,891 - +0.2 56,100 - +1.1 56,100 - +0.1 56,418 + Shew_0046 0.20 +1.0 56,517 + Shew_0046 0.28 +0.7 56,698 + Shew_0046 0.42 +0.2 56,717 + Shew_0046 0.44 +0.8 56,725 - Shew_0046 0.45 +0.8 57,185 + Shew_0046 0.81 +0.0 57,185 + Shew_0046 0.81 +0.6 57,185 + Shew_0046 0.81 +1.0 57,193 - Shew_0046 0.82 +1.8 57,193 - Shew_0046 0.82 +0.8 57,285 + Shew_0046 0.89 +0.3 57,285 + Shew_0046 0.89 +0.8 57,300 - +0.9 57,361 - +0.5 57,390 - +1.1 57,400 - +1.1 57,500 + +0.4 57,525 - Shew_0047 0.13 +0.4 57,565 + Shew_0047 0.18 +0.3 57,696 + Shew_0047 0.35 +1.7 57,704 - Shew_0047 0.36 -2.2 57,704 - Shew_0047 0.36 +0.5 57,752 - Shew_0047 0.42 +0.4 58,002 - Shew_0047 0.75 +0.6 58,399 - Shew_0048 0.12 -1.9
Or see this region's nucleotide sequence