Experiment: Cisplatin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0033 and Shew_0034 are separated by 61 nucleotides Shew_0034 and Shew_0035 are separated by 203 nucleotides
Shew_0033: Shew_0033 - peptidase M14, carboxypeptidase A (RefSeq), at 37,798 to 39,639
_0033
Shew_0034: Shew_0034 - methyltransferase type 12 (RefSeq), at 39,701 to 40,504
_0034
Shew_0035: Shew_0035 - putative lipoprotein (RefSeq), at 40,708 to 41,478
_0035
Position (kb) 39
40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 38.869 kb on + strand, within Shew_0033 at 38.881 kb on + strand, within Shew_0033 at 38.998 kb on + strand, within Shew_0033 at 39.076 kb on + strand, within Shew_0033 at 39.084 kb on - strand, within Shew_0033 at 39.100 kb on - strand, within Shew_0033 at 39.145 kb on - strand, within Shew_0033 at 39.195 kb on + strand, within Shew_0033 at 39.195 kb on + strand, within Shew_0033 at 39.195 kb on + strand, within Shew_0033 at 39.203 kb on - strand, within Shew_0033 at 39.211 kb on - strand, within Shew_0033 at 39.211 kb on - strand, within Shew_0033 at 39.609 kb on + strand at 39.628 kb on - strand at 40.137 kb on + strand, within Shew_0034 at 40.145 kb on - strand, within Shew_0034 at 40.320 kb on + strand, within Shew_0034 at 40.699 kb on - strand at 40.779 kb on - strand at 40.904 kb on - strand, within Shew_0035 at 40.906 kb on + strand, within Shew_0035 at 40.976 kb on - strand, within Shew_0035 at 41.186 kb on + strand, within Shew_0035 at 41.253 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.334 kb on + strand, within Shew_0035 at 41.335 kb on - strand, within Shew_0035 at 41.344 kb on + strand, within Shew_0035 at 41.349 kb on + strand, within Shew_0035 at 41.407 kb on - strand at 41.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 1 mg/ml remove 38,869 + Shew_0033 0.58 -0.2 38,881 + Shew_0033 0.59 +0.2 38,998 + Shew_0033 0.65 -0.1 39,076 + Shew_0033 0.69 -1.0 39,084 - Shew_0033 0.70 +0.6 39,100 - Shew_0033 0.71 +1.0 39,145 - Shew_0033 0.73 +0.5 39,195 + Shew_0033 0.76 +1.6 39,195 + Shew_0033 0.76 +0.3 39,195 + Shew_0033 0.76 -4.0 39,203 - Shew_0033 0.76 -4.4 39,211 - Shew_0033 0.77 +1.0 39,211 - Shew_0033 0.77 -0.3 39,609 + +0.1 39,628 - +0.1 40,137 + Shew_0034 0.54 -0.0 40,145 - Shew_0034 0.55 +0.1 40,320 + Shew_0034 0.77 -0.1 40,699 - +1.9 40,779 - -0.2 40,904 - Shew_0035 0.25 -1.0 40,906 + Shew_0035 0.26 -0.8 40,976 - Shew_0035 0.35 +0.2 41,186 + Shew_0035 0.62 +0.6 41,253 + Shew_0035 0.71 +0.0 41,334 + Shew_0035 0.81 +0.6 41,334 + Shew_0035 0.81 +0.6 41,334 + Shew_0035 0.81 +0.3 41,335 - Shew_0035 0.81 +1.2 41,344 + Shew_0035 0.82 +0.5 41,349 + Shew_0035 0.83 -0.1 41,407 - +0.3 41,479 + +0.2
Or see this region's nucleotide sequence