Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_783

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_782 and Pf6N2E2_783 are separated by 44 nucleotidesPf6N2E2_783 and Pf6N2E2_784 are separated by 61 nucleotides Pf6N2E2_782 - hypothetical protein, at 894,893 to 896,386 _782 Pf6N2E2_783 - hypothetical protein, at 896,431 to 897,528 _783 Pf6N2E2_784 - Outer membrane usher protein FIMD, at 897,590 to 900,085 _784 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1at 895.444 kb on + strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.445 kb on - strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.451 kb on + strand, within Pf6N2E2_782at 895.452 kb on - strand, within Pf6N2E2_782at 895.491 kb on + strand, within Pf6N2E2_782at 895.491 kb on + strand, within Pf6N2E2_782at 895.547 kb on + strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.548 kb on - strand, within Pf6N2E2_782at 895.692 kb on - strand, within Pf6N2E2_782at 895.765 kb on + strand, within Pf6N2E2_782at 895.766 kb on - strand, within Pf6N2E2_782at 895.859 kb on + strand, within Pf6N2E2_782at 895.860 kb on - strand, within Pf6N2E2_782at 895.916 kb on + strand, within Pf6N2E2_782at 895.916 kb on + strandat 895.916 kb on + strand, within Pf6N2E2_782at 895.916 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.135 kb on + strand, within Pf6N2E2_782at 896.136 kb on - strand, within Pf6N2E2_782at 896.136 kb on - strand, within Pf6N2E2_782at 896.262 kb on + strandat 896.262 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.335 kb on + strandat 896.336 kb on - strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.364 kb on + strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.365 kb on - strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.402 kb on + strandat 896.403 kb on - strandat 896.403 kb on - strandat 896.403 kb on - strandat 896.438 kb on + strandat 896.438 kb on + strandat 896.438 kb on + strandat 896.439 kb on - strandat 896.494 kb on + strandat 896.502 kb on - strandat 896.502 kb on - strandat 896.614 kb on + strand, within Pf6N2E2_783at 896.614 kb on + strand, within Pf6N2E2_783at 896.615 kb on - strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.763 kb on + strand, within Pf6N2E2_783at 896.764 kb on - strand, within Pf6N2E2_783at 896.825 kb on - strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.005 kb on + strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.006 kb on - strand, within Pf6N2E2_783at 897.027 kb on + strand, within Pf6N2E2_783at 897.027 kb on + strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.028 kb on - strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.034 kb on + strand, within Pf6N2E2_783at 897.035 kb on - strand, within Pf6N2E2_783at 897.035 kb on - strand, within Pf6N2E2_783at 897.086 kb on + strand, within Pf6N2E2_783at 897.174 kb on + strandat 897.174 kb on + strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.175 kb on - strand, within Pf6N2E2_783at 897.285 kb on + strand, within Pf6N2E2_783at 897.361 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.383 kb on + strand, within Pf6N2E2_783at 897.384 kb on - strand, within Pf6N2E2_783at 897.558 kb on + strandat 897.558 kb on + strandat 897.558 kb on + strandat 897.559 kb on - strandat 897.559 kb on - strandat 897.697 kb on + strandat 897.697 kb on + strandat 897.731 kb on + strandat 897.731 kb on + strandat 897.731 kb on + strandat 897.731 kb on + strandat 897.732 kb on - strandat 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.062 kb on - strand, within Pf6N2E2_784at 898.161 kb on + strand, within Pf6N2E2_784at 898.217 kb on + strand, within Pf6N2E2_784at 898.217 kb on + strand, within Pf6N2E2_784at 898.218 kb on - strand, within Pf6N2E2_784at 898.218 kb on - strand, within Pf6N2E2_784at 898.272 kb on + strand, within Pf6N2E2_784at 898.297 kb on + strand, within Pf6N2E2_784at 898.343 kb on + strand, within Pf6N2E2_784at 898.344 kb on - strand, within Pf6N2E2_784at 898.391 kb on + strand, within Pf6N2E2_784at 898.391 kb on + strand, within Pf6N2E2_784at 898.392 kb on - strand, within Pf6N2E2_784at 898.392 kb on - strand, within Pf6N2E2_784at 898.438 kb on + strand, within Pf6N2E2_784at 898.461 kb on + strand, within Pf6N2E2_784at 898.462 kb on - strand, within Pf6N2E2_784at 898.462 kb on - strand, within Pf6N2E2_784at 898.468 kb on + strand, within Pf6N2E2_784at 898.470 kb on + strand, within Pf6N2E2_784at 898.470 kb on + strand, within Pf6N2E2_784at 898.471 kb on - strand, within Pf6N2E2_784

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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895,444 + Pf6N2E2_782 0.37 -0.1
895,445 - Pf6N2E2_782 0.37 +0.2
895,445 - Pf6N2E2_782 0.37 -1.0
895,445 - Pf6N2E2_782 0.37 -0.4
895,451 + Pf6N2E2_782 0.37 +0.0
895,451 + Pf6N2E2_782 0.37 +0.9
895,451 + Pf6N2E2_782 0.37 -0.3
895,452 - Pf6N2E2_782 0.37 +1.1
895,491 + Pf6N2E2_782 0.40 +0.2
895,491 + Pf6N2E2_782 0.40 -1.0
895,547 + Pf6N2E2_782 0.44 -0.2
895,548 - Pf6N2E2_782 0.44 +1.5
895,548 - Pf6N2E2_782 0.44 +0.3
895,548 - Pf6N2E2_782 0.44 +0.4
895,692 - Pf6N2E2_782 0.53 +1.1
895,765 + Pf6N2E2_782 0.58 +0.6
895,766 - Pf6N2E2_782 0.58 -0.4
895,859 + Pf6N2E2_782 0.65 -0.6
895,860 - Pf6N2E2_782 0.65 -0.4
895,916 + Pf6N2E2_782 0.68 -0.5
895,916 + +0.2
895,916 + Pf6N2E2_782 0.68 +1.5
895,916 + Pf6N2E2_782 0.68 -0.2
896,135 + Pf6N2E2_782 0.83 +0.2
896,135 + Pf6N2E2_782 0.83 -0.1
896,135 + Pf6N2E2_782 0.83 +0.1
896,135 + Pf6N2E2_782 0.83 -0.0
896,136 - Pf6N2E2_782 0.83 +0.4
896,136 - Pf6N2E2_782 0.83 +1.2
896,262 + +1.6
896,262 + +1.0
896,335 + +1.0
896,335 + +0.7
896,335 + -0.3
896,335 + -0.3
896,336 - -0.1
896,364 + +1.3
896,364 + -0.4
896,364 + -0.2
896,364 + -1.0
896,364 + +0.8
896,364 + +0.5
896,364 + +0.2
896,364 + +0.4
896,364 + -1.3
896,364 + -0.2
896,364 + -0.3
896,364 + +0.2
896,365 - +0.2
896,365 - -0.3
896,365 - +0.8
896,365 - -0.4
896,365 - -0.7
896,365 - -0.6
896,365 - +0.5
896,402 + +0.6
896,402 + +0.7
896,402 + -1.9
896,402 + -1.2
896,402 + +0.8
896,403 - +0.3
896,403 - -0.4
896,403 - -2.2
896,438 + -0.4
896,438 + -1.2
896,438 + -0.0
896,439 - -0.1
896,494 + -0.9
896,502 - +0.8
896,502 - +0.8
896,614 + Pf6N2E2_783 0.17 -1.0
896,614 + Pf6N2E2_783 0.17 -0.5
896,615 - Pf6N2E2_783 0.17 -0.7
896,763 + Pf6N2E2_783 0.30 -1.2
896,763 + Pf6N2E2_783 0.30 +0.1
896,763 + Pf6N2E2_783 0.30 -0.6
896,763 + Pf6N2E2_783 0.30 +0.2
896,764 - Pf6N2E2_783 0.30 -1.4
896,825 - Pf6N2E2_783 0.36 -0.5
897,005 + Pf6N2E2_783 0.52 -0.2
897,005 + Pf6N2E2_783 0.52 -0.1
897,005 + Pf6N2E2_783 0.52 -0.5
897,006 - Pf6N2E2_783 0.52 -0.4
897,006 - Pf6N2E2_783 0.52 -0.9
897,006 - Pf6N2E2_783 0.52 -0.2
897,027 + Pf6N2E2_783 0.54 +0.4
897,027 + Pf6N2E2_783 0.54 +0.8
897,028 - Pf6N2E2_783 0.54 +0.2
897,028 - Pf6N2E2_783 0.54 -0.7
897,028 - Pf6N2E2_783 0.54 +1.3
897,034 + Pf6N2E2_783 0.55 +0.2
897,034 + Pf6N2E2_783 0.55 -1.2
897,034 + Pf6N2E2_783 0.55 -1.8
897,035 - Pf6N2E2_783 0.55 +0.2
897,035 - Pf6N2E2_783 0.55 -0.4
897,086 + Pf6N2E2_783 0.60 +0.0
897,174 + +0.8
897,174 + Pf6N2E2_783 0.68 +0.8
897,175 - Pf6N2E2_783 0.68 -0.9
897,175 - Pf6N2E2_783 0.68 +0.9
897,175 - Pf6N2E2_783 0.68 +0.0
897,285 + Pf6N2E2_783 0.78 -0.0
897,361 + Pf6N2E2_783 0.85 -0.1
897,383 + Pf6N2E2_783 0.87 -0.2
897,383 + Pf6N2E2_783 0.87 +1.3
897,383 + Pf6N2E2_783 0.87 -0.0
897,383 + Pf6N2E2_783 0.87 -1.3
897,383 + Pf6N2E2_783 0.87 +0.7
897,383 + Pf6N2E2_783 0.87 +0.1
897,383 + Pf6N2E2_783 0.87 +0.3
897,383 + Pf6N2E2_783 0.87 +1.6
897,383 + Pf6N2E2_783 0.87 +0.5
897,384 - Pf6N2E2_783 0.87 -0.4
897,558 + -0.7
897,558 + +0.1
897,558 + -0.7
897,559 - -0.4
897,559 - -0.8
897,697 + -0.2
897,697 + +0.8
897,731 + -0.0
897,731 + -0.2
897,731 + -0.5
897,731 + -0.5
897,732 - +0.2
898,062 - Pf6N2E2_784 0.19 -0.1
898,062 - Pf6N2E2_784 0.19 +0.8
898,062 - Pf6N2E2_784 0.19 +1.1
898,062 - Pf6N2E2_784 0.19 -0.3
898,062 - Pf6N2E2_784 0.19 +0.9
898,161 + Pf6N2E2_784 0.23 +1.0
898,217 + Pf6N2E2_784 0.25 +0.0
898,217 + Pf6N2E2_784 0.25 +0.5
898,218 - Pf6N2E2_784 0.25 +0.8
898,218 - Pf6N2E2_784 0.25 -0.1
898,272 + Pf6N2E2_784 0.27 -0.0
898,297 + Pf6N2E2_784 0.28 +0.7
898,343 + Pf6N2E2_784 0.30 -0.9
898,344 - Pf6N2E2_784 0.30 -0.0
898,391 + Pf6N2E2_784 0.32 -0.1
898,391 + Pf6N2E2_784 0.32 -2.0
898,392 - Pf6N2E2_784 0.32 -0.4
898,392 - Pf6N2E2_784 0.32 +0.6
898,438 + Pf6N2E2_784 0.34 -0.6
898,461 + Pf6N2E2_784 0.35 +0.9
898,462 - Pf6N2E2_784 0.35 +0.8
898,462 - Pf6N2E2_784 0.35 -1.0
898,468 + Pf6N2E2_784 0.35 +0.1
898,470 + Pf6N2E2_784 0.35 +0.2
898,470 + Pf6N2E2_784 0.35 +0.4
898,471 - Pf6N2E2_784 0.35 +0.0

Or see this region's nucleotide sequence