Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_281 and Pf6N2E2_282 are separated by 170 nucleotides Pf6N2E2_282 and Pf6N2E2_283 overlap by 8 nucleotides
Pf6N2E2_281 - Type II and III secretion system family protein, at 347,655 to 348,416
_281
Pf6N2E2_282 - GNAT family acetyltransferase YjcF, at 348,587 to 349,012
_282
Pf6N2E2_283 - FIG002776: hypothetical protein, at 349,005 to 350,171
_283
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 347.611 kb on + strand at 347.713 kb on + strand at 347.713 kb on + strand at 347.713 kb on + strand at 347.714 kb on - strand at 347.826 kb on + strand, within Pf6N2E2_281 at 347.827 kb on - strand, within Pf6N2E2_281 at 347.827 kb on - strand, within Pf6N2E2_281 at 347.827 kb on - strand at 347.911 kb on + strand, within Pf6N2E2_281 at 347.912 kb on - strand, within Pf6N2E2_281 at 347.912 kb on - strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.962 kb on + strand, within Pf6N2E2_281 at 347.963 kb on - strand, within Pf6N2E2_281 at 347.963 kb on - strand, within Pf6N2E2_281 at 347.963 kb on - strand, within Pf6N2E2_281 at 348.165 kb on - strand, within Pf6N2E2_281 at 348.446 kb on + strand at 348.487 kb on + strand at 348.487 kb on + strand at 348.487 kb on + strand at 348.488 kb on - strand at 348.488 kb on - strand at 348.488 kb on - strand at 348.672 kb on + strand, within Pf6N2E2_282 at 348.672 kb on + strand, within Pf6N2E2_282 at 349.006 kb on + strand at 349.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 347,611 + +0.9 347,713 + -0.5 347,713 + -0.1 347,713 + -0.2 347,714 - +1.2 347,826 + Pf6N2E2_281 0.22 +1.2 347,827 - Pf6N2E2_281 0.23 +1.2 347,827 - Pf6N2E2_281 0.23 +0.0 347,827 - +2.0 347,911 + Pf6N2E2_281 0.34 -0.4 347,912 - Pf6N2E2_281 0.34 +0.2 347,912 - Pf6N2E2_281 0.34 +0.5 347,962 + Pf6N2E2_281 0.40 -1.1 347,962 + Pf6N2E2_281 0.40 -0.2 347,962 + Pf6N2E2_281 0.40 +0.8 347,962 + Pf6N2E2_281 0.40 -1.2 347,963 - Pf6N2E2_281 0.40 +0.4 347,963 - Pf6N2E2_281 0.40 +0.4 347,963 - Pf6N2E2_281 0.40 +0.2 348,165 - Pf6N2E2_281 0.67 +0.9 348,446 + -1.0 348,487 + -0.2 348,487 + -0.6 348,487 + +0.0 348,488 - +0.7 348,488 - +1.4 348,488 - +2.6 348,672 + Pf6N2E2_282 0.20 -1.1 348,672 + Pf6N2E2_282 0.20 -2.8 349,006 + +0.7 349,007 - -1.0
Or see this region's nucleotide sequence