Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_210

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_209 and Pf6N2E2_210 are separated by 181 nucleotidesPf6N2E2_210 and Pf6N2E2_211 are separated by 92 nucleotidesPf6N2E2_211 and Pf6N2E2_212 overlap by 8 nucleotides Pf6N2E2_209 - O-antigen export system permease protein RfbD, at 263,376 to 264,194 _209 Pf6N2E2_210 - Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40), at 264,376 to 267,099 _210 Pf6N2E2_211 - SanC, at 267,192 to 267,779 _211 Pf6N2E2_212 - Glycosyl transferase, group 2 family protein, at 267,772 to 269,946 _212 Position (kb) 264 265 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 263.379 kb on + strandat 263.380 kb on - strandat 263.380 kb on - strandat 263.380 kb on - strandat 263.380 kb on - strandat 263.588 kb on - strand, within Pf6N2E2_209at 263.624 kb on + strand, within Pf6N2E2_209at 263.625 kb on - strand, within Pf6N2E2_209at 263.656 kb on + strand, within Pf6N2E2_209at 263.657 kb on - strand, within Pf6N2E2_209at 263.664 kb on + strand, within Pf6N2E2_209at 263.770 kb on + strand, within Pf6N2E2_209at 263.770 kb on + strand, within Pf6N2E2_209at 263.770 kb on + strand, within Pf6N2E2_209at 263.771 kb on - strandat 263.872 kb on + strand, within Pf6N2E2_209at 263.872 kb on + strand, within Pf6N2E2_209at 263.873 kb on - strand, within Pf6N2E2_209at 264.032 kb on - strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.069 kb on + strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.070 kb on - strand, within Pf6N2E2_209at 264.094 kb on + strand, within Pf6N2E2_209at 264.127 kb on + strandat 264.127 kb on + strandat 264.127 kb on + strandat 264.128 kb on - strandat 264.128 kb on - strandat 264.250 kb on + strandat 264.261 kb on + strandat 264.261 kb on + strandat 264.262 kb on - strandat 264.296 kb on + strandat 264.296 kb on + strandat 264.297 kb on - strandat 264.344 kb on + strandat 264.430 kb on + strandat 264.430 kb on + strandat 264.430 kb on + strandat 264.431 kb on - strandat 264.431 kb on - strandat 264.709 kb on + strand, within Pf6N2E2_210at 264.709 kb on + strand, within Pf6N2E2_210at 264.709 kb on + strand, within Pf6N2E2_210at 264.820 kb on + strand, within Pf6N2E2_210at 265.033 kb on + strand, within Pf6N2E2_210at 265.033 kb on + strand, within Pf6N2E2_210at 265.034 kb on - strand, within Pf6N2E2_210at 265.255 kb on + strand, within Pf6N2E2_210at 265.255 kb on + strand, within Pf6N2E2_210at 265.261 kb on + strand, within Pf6N2E2_210at 265.702 kb on - strand, within Pf6N2E2_210at 265.703 kb on + strand, within Pf6N2E2_210at 265.722 kb on - strand, within Pf6N2E2_210at 265.810 kb on + strand, within Pf6N2E2_210at 265.874 kb on + strand, within Pf6N2E2_210at 265.929 kb on + strand, within Pf6N2E2_210at 266.036 kb on + strand, within Pf6N2E2_210at 266.037 kb on - strand, within Pf6N2E2_210at 266.067 kb on - strand, within Pf6N2E2_210at 266.290 kb on + strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.291 kb on - strand, within Pf6N2E2_210at 266.330 kb on + strand, within Pf6N2E2_210at 266.368 kb on + strand, within Pf6N2E2_210at 266.520 kb on + strand, within Pf6N2E2_210at 266.520 kb on + strand, within Pf6N2E2_210at 266.521 kb on - strand, within Pf6N2E2_210at 266.521 kb on - strand, within Pf6N2E2_210at 266.521 kb on - strand, within Pf6N2E2_210at 266.521 kb on - strand, within Pf6N2E2_210at 266.524 kb on + strand, within Pf6N2E2_210at 266.524 kb on + strand, within Pf6N2E2_210at 266.525 kb on - strand, within Pf6N2E2_210at 266.525 kb on - strand, within Pf6N2E2_210at 266.596 kb on + strand, within Pf6N2E2_210at 266.597 kb on - strand, within Pf6N2E2_210at 266.597 kb on - strand, within Pf6N2E2_210at 266.597 kb on - strand, within Pf6N2E2_210at 266.597 kb on - strand, within Pf6N2E2_210at 267.097 kb on + strandat 267.097 kb on + strandat 267.097 kb on + strandat 267.097 kb on + strandat 267.098 kb on - strandat 267.098 kb on - strandat 267.098 kb on - strandat 267.098 kb on - strandat 267.256 kb on - strand, within Pf6N2E2_211at 267.256 kb on - strand, within Pf6N2E2_211at 267.256 kb on - strand, within Pf6N2E2_211at 267.261 kb on + strand, within Pf6N2E2_211at 267.261 kb on + strand, within Pf6N2E2_211at 267.261 kb on + strand, within Pf6N2E2_211at 267.261 kb on + strand, within Pf6N2E2_211at 267.261 kb on + strand, within Pf6N2E2_211at 267.262 kb on - strand, within Pf6N2E2_211at 267.262 kb on - strand, within Pf6N2E2_211at 267.262 kb on - strand, within Pf6N2E2_211at 267.504 kb on + strand, within Pf6N2E2_211at 267.505 kb on - strand, within Pf6N2E2_211at 267.623 kb on - strand, within Pf6N2E2_211at 267.706 kb on - strand, within Pf6N2E2_211at 267.777 kb on + strandat 267.777 kb on + strandat 267.778 kb on - strandat 267.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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263,379 + -0.6
263,380 - +0.3
263,380 - -0.4
263,380 - -2.1
263,380 - -2.2
263,588 - Pf6N2E2_209 0.26 -1.5
263,624 + Pf6N2E2_209 0.30 -1.7
263,625 - Pf6N2E2_209 0.30 -0.2
263,656 + Pf6N2E2_209 0.34 -0.8
263,657 - Pf6N2E2_209 0.34 +0.7
263,664 + Pf6N2E2_209 0.35 +0.8
263,770 + Pf6N2E2_209 0.48 -0.8
263,770 + Pf6N2E2_209 0.48 +0.2
263,770 + Pf6N2E2_209 0.48 -1.0
263,771 - +1.1
263,872 + Pf6N2E2_209 0.61 -1.1
263,872 + Pf6N2E2_209 0.61 +0.1
263,873 - Pf6N2E2_209 0.61 +0.9
264,032 - Pf6N2E2_209 0.80 -1.5
264,069 + Pf6N2E2_209 0.85 -2.5
264,069 + Pf6N2E2_209 0.85 -0.5
264,069 + Pf6N2E2_209 0.85 -0.2
264,069 + Pf6N2E2_209 0.85 +1.2
264,069 + Pf6N2E2_209 0.85 -0.9
264,070 - Pf6N2E2_209 0.85 -0.0
264,070 - Pf6N2E2_209 0.85 +1.7
264,070 - Pf6N2E2_209 0.85 +0.3
264,070 - Pf6N2E2_209 0.85 -1.6
264,070 - Pf6N2E2_209 0.85 +1.2
264,070 - Pf6N2E2_209 0.85 +0.1
264,094 + Pf6N2E2_209 0.88 +0.6
264,127 + -0.7
264,127 + +0.7
264,127 + +0.6
264,128 - -0.1
264,128 - +0.6
264,250 + +1.9
264,261 + -0.9
264,261 + +0.6
264,262 - +0.9
264,296 + -0.1
264,296 + -0.3
264,297 - +0.1
264,344 + +2.1
264,430 + -1.6
264,430 + -1.1
264,430 + +0.3
264,431 - +0.7
264,431 - -0.1
264,709 + Pf6N2E2_210 0.12 +0.4
264,709 + Pf6N2E2_210 0.12 +0.2
264,709 + Pf6N2E2_210 0.12 -0.8
264,820 + Pf6N2E2_210 0.16 -0.8
265,033 + Pf6N2E2_210 0.24 +0.5
265,033 + Pf6N2E2_210 0.24 +0.8
265,034 - Pf6N2E2_210 0.24 +1.2
265,255 + Pf6N2E2_210 0.32 -2.0
265,255 + Pf6N2E2_210 0.32 +1.3
265,261 + Pf6N2E2_210 0.32 +1.1
265,702 - Pf6N2E2_210 0.49 +0.7
265,703 + Pf6N2E2_210 0.49 +1.5
265,722 - Pf6N2E2_210 0.49 -1.2
265,810 + Pf6N2E2_210 0.53 +2.8
265,874 + Pf6N2E2_210 0.55 -0.5
265,929 + Pf6N2E2_210 0.57 -0.5
266,036 + Pf6N2E2_210 0.61 +0.1
266,037 - Pf6N2E2_210 0.61 +1.1
266,067 - Pf6N2E2_210 0.62 +1.5
266,290 + Pf6N2E2_210 0.70 +0.7
266,291 - Pf6N2E2_210 0.70 +1.4
266,291 - Pf6N2E2_210 0.70 +0.4
266,291 - Pf6N2E2_210 0.70 -0.1
266,291 - Pf6N2E2_210 0.70 -0.0
266,291 - Pf6N2E2_210 0.70 -0.3
266,291 - Pf6N2E2_210 0.70 +0.4
266,291 - Pf6N2E2_210 0.70 -0.7
266,330 + Pf6N2E2_210 0.72 +0.2
266,368 + Pf6N2E2_210 0.73 -0.9
266,520 + Pf6N2E2_210 0.79 +2.9
266,520 + Pf6N2E2_210 0.79 +0.1
266,521 - Pf6N2E2_210 0.79 +0.5
266,521 - Pf6N2E2_210 0.79 +0.8
266,521 - Pf6N2E2_210 0.79 -0.2
266,521 - Pf6N2E2_210 0.79 -0.1
266,524 + Pf6N2E2_210 0.79 +1.0
266,524 + Pf6N2E2_210 0.79 +1.2
266,525 - Pf6N2E2_210 0.79 +1.1
266,525 - Pf6N2E2_210 0.79 +0.5
266,596 + Pf6N2E2_210 0.81 +1.0
266,597 - Pf6N2E2_210 0.82 +0.7
266,597 - Pf6N2E2_210 0.82 +0.4
266,597 - Pf6N2E2_210 0.82 -1.1
266,597 - Pf6N2E2_210 0.82 +2.1
267,097 + -0.2
267,097 + +0.3
267,097 + +0.6
267,097 + +0.5
267,098 - -1.5
267,098 - +2.3
267,098 - -0.2
267,098 - -0.5
267,256 - Pf6N2E2_211 0.11 +1.4
267,256 - Pf6N2E2_211 0.11 -0.1
267,256 - Pf6N2E2_211 0.11 -0.1
267,261 + Pf6N2E2_211 0.12 -0.2
267,261 + Pf6N2E2_211 0.12 -0.2
267,261 + Pf6N2E2_211 0.12 -0.3
267,261 + Pf6N2E2_211 0.12 -1.9
267,261 + Pf6N2E2_211 0.12 +0.6
267,262 - Pf6N2E2_211 0.12 +0.9
267,262 - Pf6N2E2_211 0.12 -0.3
267,262 - Pf6N2E2_211 0.12 +0.1
267,504 + Pf6N2E2_211 0.53 -0.3
267,505 - Pf6N2E2_211 0.53 +1.0
267,623 - Pf6N2E2_211 0.73 +0.4
267,706 - Pf6N2E2_211 0.87 +0.2
267,777 + -1.2
267,777 + +0.6
267,778 - -1.3
267,850 - +0.5

Or see this region's nucleotide sequence