Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS11480

Experiment: R2A with chromate 0.0048828125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with chromate 0.0048828125 mM
2,546,161	+		LRK54_RS11475	0.60	-0.1
2,546,161	+		LRK54_RS11475	0.60	-0.4
2,546,161	+		LRK54_RS11475	0.60	-1.6
2,546,161	+		LRK54_RS11475	0.60	+0.7
2,546,161	+		LRK54_RS11475	0.60	+0.0
2,546,161	+		LRK54_RS11475	0.60	-2.4
2,546,161	+		LRK54_RS11475	0.60	-1.2
2,546,162	-		LRK54_RS11475	0.60	-1.3
2,546,162	-		LRK54_RS11475	0.60	+2.3
2,546,177	-		LRK54_RS11475	0.61	-1.9
2,546,177	-		LRK54_RS11475	0.61	+0.4
2,546,177	-		LRK54_RS11475	0.61	-0.7
2,546,182	+		LRK54_RS11475	0.61	-1.6
2,546,182	+		LRK54_RS11475	0.61	+0.7
2,546,183	-		LRK54_RS11475	0.62	-0.5
2,546,183	-		LRK54_RS11475	0.62	-0.4
2,546,183	-		LRK54_RS11475	0.62	-2.0
2,546,183	-		LRK54_RS11475	0.62	-1.8
2,546,183	-		LRK54_RS11475	0.62	-0.4
2,546,200	+		LRK54_RS11475	0.63	-0.2
2,546,377	+		LRK54_RS11475	0.73	-1.8
2,546,377	+		LRK54_RS11475	0.73	-0.7
2,546,377	+		LRK54_RS11475	0.73	-0.8
2,546,377	+		LRK54_RS11475	0.73	-2.0
2,546,377	+		LRK54_RS11475	0.73	-0.1
2,546,378	-		LRK54_RS11475	0.73	-2.1
2,546,378	-		LRK54_RS11475	0.73	+1.9
2,546,378	-		LRK54_RS11475	0.73	-1.2
2,546,378	-		LRK54_RS11475	0.73	-0.2
2,546,536	+		LRK54_RS11475	0.83	+0.2
2,546,537	-		LRK54_RS11475	0.83	-1.1
2,546,537	-		LRK54_RS11475	0.83	-0.4
2,546,537	-		LRK54_RS11475	0.83	-1.1
2,546,537	-		LRK54_RS11475	0.83	-0.7
2,546,537	-		LRK54_RS11475	0.83	-0.7
2,546,587	+		LRK54_RS11475	0.86	+2.3
2,546,709	+				-2.9
2,546,709	+				-0.4
2,546,709	+				-1.5
2,546,709	+				-0.1
2,546,709	+				-0.5
2,546,710	-				+0.4
2,546,710	-				-2.5
2,546,710	-				-2.4
2,546,710	-				-1.0
2,546,710	-				+0.9
2,546,710	-				+0.8
2,546,710	-				-0.7
2,546,710	-				+1.1
2,546,710	-				-1.6
2,546,790	+				+2.9
2,546,790	+				-2.9
2,546,790	+				-1.2
2,546,790	+				+0.6
2,546,790	+				-0.3
2,546,791	-				-3.6
2,546,791	-				-0.6
2,546,791	-				+1.1
2,546,791	-				-1.3
2,546,791	-				-0.2
2,546,791	-				+0.0
2,546,791	-				-1.5
2,546,791	-				-2.5
2,546,791	-				-3.3
2,546,791	-				+0.1
2,547,044	+		LRK54_RS11480	0.19	-0.4
2,547,044	+		LRK54_RS11480	0.19	-0.4
2,547,045	-		LRK54_RS11480	0.19	+0.3
2,547,045	-		LRK54_RS11480	0.19	+2.3
2,547,045	-		LRK54_RS11480	0.19	-0.9
2,547,045	-		LRK54_RS11480	0.19	-1.4
2,547,045	-		LRK54_RS11480	0.19	-1.3
2,547,114	-		LRK54_RS11480	0.25	-1.5
2,547,134	+		LRK54_RS11480	0.26	-0.2
2,547,135	-		LRK54_RS11480	0.26	-1.9
2,547,135	-		LRK54_RS11480	0.26	+1.3
2,547,135	-		LRK54_RS11480	0.26	+0.3
2,547,224	+		LRK54_RS11480	0.34	+1.4
2,547,224	+		LRK54_RS11480	0.34	+1.6
2,547,225	-		LRK54_RS11480	0.34	-1.5
2,547,611	+		LRK54_RS11480	0.66	+2.0
2,547,612	-		LRK54_RS11480	0.66	-1.3
2,547,612	-		LRK54_RS11480	0.66	-0.4
2,547,707	+		LRK54_RS11480	0.74	-0.6
2,547,707	+		LRK54_RS11480	0.74	-0.9
2,547,707	+		LRK54_RS11480	0.74	-1.2
2,547,707	+		LRK54_RS11480	0.74	+0.1
2,547,707	+		LRK54_RS11480	0.74	+0.1
2,547,707	+		LRK54_RS11480	0.74	-2.6
2,547,708	-		LRK54_RS11480	0.74	-0.2
2,547,708	-		LRK54_RS11480	0.74	-0.1
2,547,708	-		LRK54_RS11480	0.74	+0.2
2,547,708	-		LRK54_RS11480	0.74	-1.8
2,547,708	-		LRK54_RS11480	0.74	-0.6
2,547,708	-		LRK54_RS11480	0.74	+1.6
2,547,708	-		LRK54_RS11480	0.74	-1.1
2,547,737	+		LRK54_RS11480	0.76	-0.3
2,547,737	+		LRK54_RS11480	0.76	+0.2
2,547,738	-		LRK54_RS11480	0.76	-0.5
2,547,738	-		LRK54_RS11480	0.76	-1.8
2,547,771	-		LRK54_RS11480	0.79	-0.4
2,547,905	+				-1.8
2,547,905	+				+0.1
2,547,905	+				-2.0
2,547,905	+				+0.1
2,547,905	+				-0.8
2,547,905	+				-0.2
2,547,905	+				+0.6
2,547,905	+				-1.0
2,547,905	+				-1.3
2,547,905	+				-0.1
2,547,905	+				-0.9
2,547,905	+				+1.6
2,547,905	+				+0.8
2,547,905	+				-0.4
2,547,905	+				-0.8
2,547,905	+				-0.0
2,547,905	+				-0.4
2,547,906	-				+1.6
2,547,906	-				+2.3
2,547,906	-				-1.2
2,547,906	-				-2.3
2,547,906	-				+0.4
2,547,906	-				-0.6
2,547,906	-				-2.4
2,547,906	-				-1.6
2,547,906	-				+1.6
2,548,122	+				+0.9
2,548,122	+				-0.7
2,548,122	+				-1.1
2,548,122	+				-0.7
2,548,122	+				+0.4
2,548,122	+				-0.0
2,548,123	-				-1.0
2,548,123	-				-1.0
2,548,150	+				+1.3
2,548,150	+				+0.3
2,548,150	+				-0.8
2,548,150	+				-0.0
2,548,151	-				+0.7
2,548,151	-				-1.4
2,548,151	-				+1.9
2,548,151	-				-0.5
2,548,151	-				-1.3
2,548,151	-				-0.5
2,548,151	-				-0.9
2,548,151	-				-1.9
2,548,151	-				+0.7
2,548,151	-				+0.2
2,548,169	+		LRK54_RS11485	0.11	+0.2
2,548,169	+		LRK54_RS11485	0.11	+1.5
2,548,169	+		LRK54_RS11485	0.11	-0.7
2,548,170	-		LRK54_RS11485	0.11	-1.7
2,548,170	-		LRK54_RS11485	0.11	+1.5
2,548,170	-		LRK54_RS11485	0.11	-2.5
2,548,174	+		LRK54_RS11485	0.12	-1.3
2,548,175	-		LRK54_RS11485	0.12	-1.1
2,548,175	-		LRK54_RS11485	0.12	+0.1
2,548,247	+		LRK54_RS11485	0.17	-0.6
2,548,248	-		LRK54_RS11485	0.17	-2.2
2,548,248	-		LRK54_RS11485	0.17	+0.4
2,548,282	+		LRK54_RS11485	0.20	+0.1
2,548,282	+		LRK54_RS11485	0.20	-2.9
2,548,282	+		LRK54_RS11485	0.20	+0.7
2,548,282	+		LRK54_RS11485	0.20	-0.4
2,548,282	+		LRK54_RS11485	0.20	+0.4
2,548,282	+		LRK54_RS11485	0.20	+0.4
2,548,282	+		LRK54_RS11485	0.20	-0.0
2,548,282	+		LRK54_RS11485	0.20	-1.2
2,548,282	+		LRK54_RS11485	0.20	-0.1
2,548,282	+		LRK54_RS11485	0.20	+0.4
2,548,283	-		LRK54_RS11485	0.20	-2.7
2,548,283	-		LRK54_RS11485	0.20	-0.8
2,548,283	-		LRK54_RS11485	0.20	-1.2
2,548,283	-		LRK54_RS11485	0.20	+0.7
2,548,283	-		LRK54_RS11485	0.20	+0.6
2,548,283	-		LRK54_RS11485	0.20	+0.7
2,548,283	-		LRK54_RS11485	0.20	-1.7
2,548,283	-		LRK54_RS11485	0.20	-0.7
2,548,283	-		LRK54_RS11485	0.20	-1.5
2,548,339	+		LRK54_RS11485	0.24	-2.0
2,548,340	-		LRK54_RS11485	0.24	+0.0
2,548,340	-		LRK54_RS11485	0.24	+0.1
2,548,456	+		LRK54_RS11485	0.33	+0.3
2,548,522	+		LRK54_RS11485	0.38	+0.0
2,548,522	+		LRK54_RS11485	0.38	-1.0
2,548,522	+		LRK54_RS11485	0.38	+0.5
2,548,522	+		LRK54_RS11485	0.38	-2.7
2,548,522	+		LRK54_RS11485	0.38	-3.6
2,548,523	-		LRK54_RS11485	0.38	-2.4
2,548,523	-		LRK54_RS11485	0.38	-0.7
2,548,898	+		LRK54_RS11485	0.67	-0.1
2,548,898	+		LRK54_RS11485	0.67	+2.3
2,548,898	+		LRK54_RS11485	0.67	-1.1
2,548,898	+		LRK54_RS11485	0.67	+0.4
2,548,899	-		LRK54_RS11485	0.67	-3.0
2,548,899	-		LRK54_RS11485	0.67	-1.7