Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07440

Experiment: R2A with chromate 0.0048828125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with chromate 0.0048828125 mM
1,603,241	+		LRK54_RS07435	0.71	+0.7
1,603,241	+		LRK54_RS07435	0.71	-1.5
1,603,241	+		LRK54_RS07435	0.71	-1.4
1,603,304	+		LRK54_RS07435	0.79	+0.3
1,603,304	+		LRK54_RS07435	0.79	+1.1
1,603,304	+		LRK54_RS07435	0.79	+0.3
1,603,304	+		LRK54_RS07435	0.79	+0.8
1,603,304	+		LRK54_RS07435	0.79	-0.1
1,603,304	+		LRK54_RS07435	0.79	-0.9
1,603,305	-		LRK54_RS07435	0.79	-1.2
1,603,305	-		LRK54_RS07435	0.79	-1.6
1,603,305	-		LRK54_RS07435	0.79	-1.4
1,603,305	-		LRK54_RS07435	0.79	+0.2
1,603,305	-		LRK54_RS07435	0.79	-1.0
1,603,305	-		LRK54_RS07435	0.79	+0.5
1,603,305	-		LRK54_RS07435	0.79	-1.3
1,603,305	-		LRK54_RS07435	0.79	-0.4
1,603,305	-		LRK54_RS07435	0.79	-2.0
1,603,305	-		LRK54_RS07435	0.79	+0.3
1,603,305	-		LRK54_RS07435	0.79	-0.9
1,603,305	-		LRK54_RS07435	0.79	+1.0
1,603,543	+				-0.7
1,603,543	+				+1.9
1,603,543	+				+0.1
1,603,543	+				+0.7
1,603,543	+				-0.9
1,603,543	+				+0.6
1,603,543	+				+0.7
1,603,543	+				+0.9
1,603,543	+				-0.8
1,603,543	+				+0.2
1,603,543	+				-2.5
1,603,543	+				+0.5
1,603,544	-				+0.1
1,603,544	-				-1.4
1,603,544	-				-1.0
1,603,544	-				-0.5
1,603,544	-				+1.7
1,603,579	+				-0.4
1,603,586	+				+0.3
1,603,586	+				+0.4
1,603,586	+				+1.8
1,603,586	+				-0.8
1,603,587	-				+1.0
1,603,595	-				+1.1
1,603,595	-				-1.5
1,603,595	-				-0.3
1,603,680	+				+0.0
1,603,680	+				-0.3
1,603,680	+				-1.0
1,603,680	+				+0.9
1,603,681	-				+0.2
1,603,681	-				+0.2
1,603,695	+				-0.8
1,603,696	-				-3.0
1,603,696	-				-0.3
1,603,964	+				+0.3
1,603,964	+				-0.5
1,603,965	-				+1.6
1,604,020	+				-1.0
1,604,020	+				+1.3
1,604,020	+				+2.7
1,604,020	+				+0.2
1,604,021	-				-2.2
1,604,021	-				-1.8
1,604,021	-				-1.2
1,604,038	+				-2.0
1,604,038	+				-2.2
1,604,039	-				+0.6
1,604,039	-				-1.3
1,604,039	-				-1.7
1,604,040	+				-0.3
1,604,040	+				-0.0
1,604,040	+				+0.6
1,604,040	+				-1.1
1,604,040	+				-1.1
1,604,040	+				-0.1
1,604,040	+				-1.5
1,604,041	-				-2.3
1,604,041	-				-0.2
1,604,041	-				+0.9
1,604,041	-				-1.0
1,604,041	-				+1.2
1,604,041	-				-1.6
1,604,041	-				-0.2
1,604,041	-				-1.0
1,604,041	-				+0.3
1,604,041	-				+1.2
1,604,041	-				-1.0
1,604,041	-				+1.1
1,604,042	-				+0.1
1,604,115	+				-1.5
1,604,121	+				-2.7
1,604,121	+				-0.7
1,604,122	-				+2.3
1,604,122	-				-1.0
1,604,167	+				-0.2
1,604,167	+				+1.3
1,604,167	+				-1.2
1,604,167	+				+2.3
1,604,167	+				-0.6
1,604,167	+				-3.2
1,604,167	+				-1.9
1,604,167	+				-0.6
1,604,167	+				+0.6
1,604,167	+				-1.7
1,604,167	+				-2.0
1,604,167	+				-0.6
1,604,167	+				+0.5
1,604,167	+				-1.9
1,604,167	+				+2.5
1,604,168	-				-0.9
1,604,168	-				-0.5
1,604,168	-				+1.4
1,604,168	-				+1.6
1,604,168	-				+0.3
1,604,168	-				-2.6
1,604,169	+				-0.5
1,604,169	+				-1.3
1,604,169	+				+0.4
1,604,169	+				-0.3
1,604,169	+				+0.1
1,604,170	-				+2.6
1,604,170	-				-1.8
1,604,170	-				+1.9
1,604,170	-				+2.6
1,604,170	-				-0.2
1,604,179	+				+0.5
1,604,179	+				-2.1
1,604,179	+				-2.1
1,604,179	+				-0.3
1,604,179	+				+2.3
1,604,179	+				-1.3
1,604,179	+				-1.3
1,604,179	+				-1.4
1,604,179	+				+0.7
1,604,179	+				-0.4
1,604,179	+				-0.5
1,604,179	+				+1.1
1,604,179	+				-0.0
1,604,180	-				-0.0
1,604,180	-				-1.3
1,604,180	-				-1.0
1,604,180	-				-0.6
1,604,180	-				-1.3
1,604,180	-				-0.0
1,604,180	-				-3.3
1,604,180	-				+0.9
1,604,180	-				-1.0
1,604,180	-				-1.4
1,604,180	-				-1.0
1,604,180	-				-2.1
1,604,207	+				+0.4
1,604,207	+				-0.3
1,604,207	+				-2.2
1,604,208	-				-1.0
1,604,208	-				+1.1
1,604,208	-				-0.8
1,604,335	+		LRK54_RS07440	0.24	+1.3
1,604,335	+		LRK54_RS07440	0.24	-0.9
1,604,335	+		LRK54_RS07440	0.24	+0.3
1,604,335	+		LRK54_RS07440	0.24	-0.0
1,604,335	+		LRK54_RS07440	0.24	-0.2
1,604,335	+		LRK54_RS07440	0.24	-1.8
1,604,335	+		LRK54_RS07440	0.24	-0.4
1,604,335	+		LRK54_RS07440	0.24	-1.3
1,604,335	+		LRK54_RS07440	0.24	-1.6
1,604,335	+		LRK54_RS07440	0.24	-1.3
1,604,335	+		LRK54_RS07440	0.24	-0.3
1,604,335	+		LRK54_RS07440	0.24	-0.0
1,604,336	-		LRK54_RS07440	0.24	+0.5
1,604,336	-		LRK54_RS07440	0.24	-1.9
1,604,336	-		LRK54_RS07440	0.24	+0.3
1,604,336	-		LRK54_RS07440	0.24	+0.2
1,604,336	-		LRK54_RS07440	0.24	-2.8
1,604,336	-		LRK54_RS07440	0.24	-1.8
1,604,336	-		LRK54_RS07440	0.24	-1.1
1,604,336	-		LRK54_RS07440	0.24	-0.2
1,604,336	-		LRK54_RS07440	0.24	-1.8
1,604,336	-		LRK54_RS07440	0.24	-0.5
1,604,336	-		LRK54_RS07440	0.24	-2.4
1,604,336	-		LRK54_RS07440	0.24	-2.2
1,604,336	-		LRK54_RS07440	0.24	+0.4
1,604,338	+		LRK54_RS07440	0.24	-0.0
1,604,338	+		LRK54_RS07440	0.24	-1.5
1,604,338	+		LRK54_RS07440	0.24	-1.4
1,604,338	+		LRK54_RS07440	0.24	-0.6
1,604,338	+		LRK54_RS07440	0.24	-0.3
1,604,338	+		LRK54_RS07440	0.24	-0.8
1,604,338	+		LRK54_RS07440	0.24	-0.6
1,604,338	+		LRK54_RS07440	0.24	-0.8
1,604,339	-		LRK54_RS07440	0.25	-1.9
1,604,339	-		LRK54_RS07440	0.25	-2.3
1,604,339	-		LRK54_RS07440	0.25	-2.9
1,604,339	-		LRK54_RS07440	0.25	+2.3
1,604,339	-		LRK54_RS07440	0.25	+0.4
1,604,339	-		LRK54_RS07440	0.25	-0.7
1,604,339	-		LRK54_RS07440	0.25	+2.9
1,604,512	-		LRK54_RS07440	0.64	+0.2
1,604,512	-		LRK54_RS07440	0.64	-0.8
1,604,563	+		LRK54_RS07440	0.76	-1.0
1,604,563	+		LRK54_RS07440	0.76	-0.7
1,604,563	+		LRK54_RS07440	0.76	+1.3
1,604,563	+		LRK54_RS07440	0.76	+0.9
1,604,563	+		LRK54_RS07440	0.76	-2.3
1,604,564	-		LRK54_RS07440	0.76	-1.5
1,604,564	-		LRK54_RS07440	0.76	-0.3
1,604,564	-		LRK54_RS07440	0.76	-2.0
1,604,564	-		LRK54_RS07440	0.76	+0.4
1,604,564	-		LRK54_RS07440	0.76	-2.0
1,604,564	-		LRK54_RS07440	0.76	-0.8
1,604,564	-		LRK54_RS07440	0.76	-2.0
1,604,699	+				-0.8
1,604,699	+				+0.0
1,604,699	+				-0.2
1,604,699	+				+1.4
1,604,699	+				-0.4
1,604,699	+				-0.2
1,604,699	+				-0.6
1,604,699	+				-0.7
1,604,699	+				-0.3
1,604,699	+				-1.0
1,604,699	+				+0.8
1,604,699	+				-2.5
1,604,699	+				+0.6
1,604,699	+				+2.2
1,604,699	+				-0.7
1,604,699	+				-0.6
1,604,699	+				-1.7
1,604,699	+				+2.3
1,604,699	+				-0.1
1,604,699	+				+1.3
1,604,699	+				+0.1
1,604,699	+				-0.8
1,604,699	+				-0.3
1,604,699	+				-1.9
1,604,699	+				+2.3
1,604,699	+				-2.2
1,604,699	+				-0.0
1,604,699	+				+1.2
1,604,699	+				-0.1
1,604,699	+				-0.4
1,604,699	+				+1.4
1,604,699	+				+0.4
1,604,699	+				-1.0
1,604,699	+				-1.7
1,604,699	+				-1.4
1,604,700	-				+0.9
1,604,700	-				-0.9
1,604,700	-				-0.7
1,604,700	-				-3.0
1,604,700	-				-3.2
1,604,700	-				+0.3
1,604,700	-				+1.1
1,604,700	-				-2.2
1,604,700	-				-0.4
1,604,700	-				-1.5
1,604,700	-				-0.2
1,604,700	-				-0.6
1,604,700	-				-1.7
1,604,700	-				-1.4
1,604,700	-				-0.9
1,604,700	-				-1.3
1,604,700	-				-2.7
1,604,700	-				-0.5
1,604,700	-				-1.1
1,604,700	-				-0.9
1,604,700	-				+0.2
1,604,700	-				-1.9
1,604,700	-				-0.7
1,604,700	-				-0.4
1,604,700	-				-0.6
1,604,700	-				+0.9
1,604,700	-				+1.6
1,604,700	-				+1.3
1,604,700	-				-2.0
1,604,700	-				+1.9
1,604,700	-				+0.1
1,604,700	-				-2.8
1,604,700	-				+0.5
1,604,700	-				-1.2
1,604,700	-				-1.5
1,604,700	-				+1.3
1,604,700	-				-1.0
1,604,700	-				-1.3
1,604,700	-				-1.1
1,604,700	-				-1.1
1,604,700	-				-1.8
1,604,700	-				+1.6
1,604,700	-				-0.3
1,604,703	+				+0.8
1,604,703	+				-1.0
1,604,703	+				+0.1
1,604,703	+				+1.3
1,604,703	+				-0.8
1,604,703	+				+0.4
1,604,703	+				-1.2
1,604,703	+				-1.0
1,604,703	+				-1.8
1,604,703	+				+1.3
1,604,703	+				-1.8
1,604,704	-				-1.5
1,604,704	-				-2.0
1,604,704	-				+0.2
1,604,704	-				-0.1
1,604,704	-				-0.8
1,604,704	-				+0.9
1,604,704	-				-0.2
1,604,704	-				-0.7
1,604,722	+				-3.1
1,604,723	-				-1.3
1,604,723	-				-2.6
1,604,723	-				-1.4
1,604,730	+				-0.7
1,604,730	+				+0.2
1,604,731	-				-1.0
1,604,731	-				+0.6
1,604,766	+				+1.1
1,604,766	+				+1.6
1,604,766	+				+0.1
1,604,766	+				-1.0
1,604,766	+				+1.6
1,604,767	-				+0.4
1,604,767	-				+2.3
1,604,767	-				-1.6
1,604,767	-				-0.9
1,604,767	-				+3.9
1,604,767	-				+0.3
1,604,767	-				-1.6
1,604,790	+				-0.6
1,604,790	+				+1.2
1,604,790	+				+0.2
1,604,790	+				-0.3
1,604,790	+				-1.0
1,604,790	+				-0.1
1,604,790	+				+0.2
1,604,790	+				-0.0
1,604,790	+				-1.7
1,604,790	+				-1.7
1,604,790	+				-1.5
1,604,790	+				-2.4
1,604,790	+				-1.5
1,604,790	+				-2.0
1,604,790	+				-1.8
1,604,790	+				+0.3
1,604,790	+				-0.3
1,604,791	-				-1.2
1,604,791	-				+1.3
1,604,791	-				+0.3
1,604,791	-				+0.2
1,604,791	-				+0.6
1,604,791	-				-1.6
1,604,791	-				+0.0
1,604,791	-				-0.3
1,604,791	-				-1.6
1,604,791	-				-0.3
1,604,791	-				-0.8
1,604,791	-				-0.2
1,604,791	-				-1.3
1,604,791	-				+0.2
1,604,791	-				-0.6
1,604,791	-				-1.0
1,604,791	-				+1.0
1,604,791	-				-1.7
1,604,829	+				-1.9
1,604,829	+				-0.5
1,604,829	+				-0.5
1,604,829	+				-1.9
1,604,829	+				-1.2
1,604,829	+				+1.6
1,604,829	+				+1.3
1,604,829	+				+0.4
1,604,829	+				+0.9
1,604,829	+				-1.5
1,604,829	+				+0.7
1,604,829	+				+1.3
1,604,830	-				+0.7
1,604,830	-				-2.5
1,604,830	-				-1.8
1,604,830	-				+0.0
1,604,849	+				-1.2
1,604,849	+				+2.7
1,604,849	+				-0.5
1,604,850	-				+1.6
1,604,850	-				-2.1
1,604,850	-				-0.1
1,604,896	+				-0.7
1,604,896	+				-0.2
1,604,896	+				+0.1
1,604,896	+				-0.0
1,604,896	+				-1.6
1,604,896	+				-1.3
1,604,896	+				-1.6
1,604,896	+				+0.8
1,604,897	-				-0.8
1,604,897	-				-1.8
1,604,897	-				-0.5
1,604,897	-				-1.4
1,604,902	+				+0.2
1,604,902	+				+0.2
1,604,902	+				-1.8
1,604,902	+				-1.0
1,604,902	+				-1.2
1,604,902	+				+1.9
1,604,902	+				-0.3
1,604,903	-				-0.4
1,604,903	-				-1.5
1,604,903	-				-3.4
1,604,903	-				-2.3
1,604,903	-				-0.4
1,604,903	-				+1.9
1,604,903	-				-1.5
1,604,938	+				+0.3
1,604,938	+				-0.5
1,604,939	-				+1.7
1,604,939	-				-1.5
1,605,086	+				-1.0
1,605,086	+				+1.6
1,605,086	+				+0.2
1,605,086	+				-0.0
1,605,086	+				+1.8
1,605,087	-				-1.2
1,605,087	-				+1.6
1,605,087	-				-1.0
1,605,087	-				+0.6
1,605,087	-				+1.9
1,605,087	-				+1.2
1,605,087	-				-0.7
1,605,087	-				-1.0
1,605,229	+				+1.1
1,605,229	+				+0.4
1,605,229	+				+0.7
1,605,230	-				+1.6
1,605,230	-				-1.6
1,605,312	+		LRK54_RS07445	0.21	+0.6
1,605,312	+		LRK54_RS07445	0.21	+2.4
1,605,312	+		LRK54_RS07445	0.21	-1.1
1,605,312	+		LRK54_RS07445	0.21	-1.2
1,605,312	+		LRK54_RS07445	0.21	-0.2
1,605,313	-		LRK54_RS07445	0.21	-2.0
1,605,313	-		LRK54_RS07445	0.21	-0.1
1,605,313	-		LRK54_RS07445	0.21	-2.8
1,605,313	-		LRK54_RS07445	0.21	+1.9
1,605,339	+		LRK54_RS07445	0.27	+1.4
1,605,339	+		LRK54_RS07445	0.27	-1.3
1,605,339	+		LRK54_RS07445	0.27	-2.4
1,605,339	+		LRK54_RS07445	0.27	+0.6
1,605,339	+		LRK54_RS07445	0.27	-0.2
1,605,339	+		LRK54_RS07445	0.27	-1.3
1,605,340	-		LRK54_RS07445	0.27	-1.7
1,605,340	-		LRK54_RS07445	0.27	-0.9
1,605,340	-		LRK54_RS07445	0.27	-0.9
1,605,340	-		LRK54_RS07445	0.27	-0.8
1,605,369	+		LRK54_RS07445	0.35	-1.5
1,605,369	+		LRK54_RS07445	0.35	-2.5
1,605,369	+		LRK54_RS07445	0.35	-1.0
1,605,369	+		LRK54_RS07445	0.35	-0.2
1,605,369	+		LRK54_RS07445	0.35	+0.3
1,605,370	-		LRK54_RS07445	0.35	+0.1
1,605,370	-		LRK54_RS07445	0.35	-0.1
1,605,370	-		LRK54_RS07445	0.35	+0.4
1,605,370	-		LRK54_RS07445	0.35	-1.4
1,605,370	-		LRK54_RS07445	0.35	-2.3
1,605,370	-		LRK54_RS07445	0.35	+0.0
1,605,370	-		LRK54_RS07445	0.35	-1.8
1,605,370	-		LRK54_RS07445	0.35	-1.6