Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06660

Experiment: R2A with chromate 0.0048828125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with chromate 0.0048828125 mM
1,431,776	+		LRK54_RS06650	0.65	-2.2
1,431,776	+		LRK54_RS06650	0.65	-0.3
1,431,776	+		LRK54_RS06650	0.65	+1.6
1,431,777	-		LRK54_RS06650	0.65	-0.7
1,431,777	-		LRK54_RS06650	0.65	+0.3
1,431,777	-		LRK54_RS06650	0.65	+0.1
1,431,777	-		LRK54_RS06650	0.65	-0.7
1,431,869	+		LRK54_RS06650	0.75	-1.2
1,431,869	+		LRK54_RS06650	0.75	-1.4
1,431,869	+		LRK54_RS06650	0.75	+0.9
1,431,869	+		LRK54_RS06650	0.75	-0.6
1,431,869	+		LRK54_RS06650	0.75	+1.9
1,431,869	+		LRK54_RS06650	0.75	-0.9
1,431,869	+		LRK54_RS06650	0.75	-1.3
1,431,869	+		LRK54_RS06650	0.75	-0.2
1,431,869	+		LRK54_RS06650	0.75	+2.9
1,431,869	+		LRK54_RS06650	0.75	-0.8
1,431,869	+		LRK54_RS06650	0.75	-2.4
1,431,869	+		LRK54_RS06650	0.75	+1.2
1,431,869	+		LRK54_RS06650	0.75	+1.3
1,431,870	-		LRK54_RS06650	0.76	-0.5
1,431,870	-		LRK54_RS06650	0.76	-2.2
1,431,870	-		LRK54_RS06650	0.76	+1.1
1,431,870	-		LRK54_RS06650	0.76	+0.0
1,431,870	-		LRK54_RS06650	0.76	-0.5
1,431,870	-		LRK54_RS06650	0.76	-0.5
1,431,870	-		LRK54_RS06650	0.76	-0.2
1,431,870	-		LRK54_RS06650	0.76	-0.1
1,431,870	-		LRK54_RS06650	0.76	+0.6
1,431,870	-		LRK54_RS06650	0.76	+1.6
1,431,870	-		LRK54_RS06650	0.76	+1.1
1,431,870	-		LRK54_RS06650	0.76	+0.3
1,431,870	-		LRK54_RS06650	0.76	+1.9
1,431,870	-		LRK54_RS06650	0.76	+0.1
1,431,870	-		LRK54_RS06650	0.76	-0.4
1,431,870	-		LRK54_RS06650	0.76	-1.4
1,431,953	+		LRK54_RS06650	0.85	-1.4
1,431,953	+		LRK54_RS06650	0.85	-2.1
1,431,953	+		LRK54_RS06650	0.85	-0.4
1,431,953	+		LRK54_RS06650	0.85	-0.5
1,431,953	+		LRK54_RS06650	0.85	-1.0
1,431,954	-		LRK54_RS06650	0.85	+0.9
1,431,954	-		LRK54_RS06650	0.85	+1.9
1,431,954	-		LRK54_RS06650	0.85	+0.5
1,431,954	-		LRK54_RS06650	0.85	-0.6
1,431,954	-		LRK54_RS06650	0.85	-0.4
1,431,962	+		LRK54_RS06650	0.86	-0.8
1,431,962	+		LRK54_RS06650	0.86	-1.3
1,431,962	+		LRK54_RS06650	0.86	-0.8
1,431,962	+		LRK54_RS06650	0.86	+0.0
1,431,963	-		LRK54_RS06650	0.86	-0.5
1,432,055	+				-1.6
1,432,055	+				-2.1
1,432,055	+				-1.9
1,432,055	+				-0.8
1,432,055	+				+0.3
1,432,055	+				-0.5
1,432,055	+				-0.9
1,432,055	+				-1.5
1,432,055	+				-1.9
1,432,055	+				-0.1
1,432,055	+				-0.1
1,432,055	+				-0.5
1,432,055	+				-1.4
1,432,055	+				-1.1
1,432,055	+				+0.5
1,432,055	+				+0.3
1,432,055	+				-0.1
1,432,056	-				-1.2
1,432,056	-				-1.0
1,432,056	-				+0.8
1,432,056	-				-1.8
1,432,056	-				-0.8
1,432,056	-				-0.2
1,432,056	-				-1.8
1,432,056	-				-0.3
1,432,056	-				-0.4
1,432,056	-				-0.3
1,432,056	-				+0.5
1,432,056	-				-0.1
1,432,056	-				-1.2
1,432,056	-				-0.4
1,432,128	+				-0.8
1,432,128	+				-0.3
1,432,129	-				-0.8
1,432,833	+				-0.7
1,432,833	+				+0.1
1,432,833	+				-1.3
1,432,833	+				+1.1
1,432,833	+				-2.4
1,432,833	+				-0.0
1,432,833	+				+3.9
1,432,833	+				-0.4
1,432,833	+				-0.7
1,432,833	+				-0.5
1,432,833	+				-0.8
1,432,833	+				-0.7
1,432,833	+				-0.6
1,432,833	+				+1.3
1,432,833	+				-0.4
1,432,833	+				-0.8
1,432,833	+				+0.5
1,432,833	+				-2.3
1,432,834	-				-2.0
1,432,834	-				+1.1
1,432,834	-				-1.1
1,432,834	-				-1.4
1,432,834	-				+0.8
1,432,834	-				-0.8
1,432,834	-				-1.2
1,432,834	-				+0.6
1,432,834	-				+0.6
1,432,834	-				+1.9
1,432,834	-				-2.2
1,432,834	-				-1.5
1,432,834	-				-0.2
1,432,834	-				-2.2
1,432,834	-				-1.7
1,432,834	-				-1.3
1,432,834	-				-1.1
1,432,834	-				-1.9
1,432,834	-				+0.2
1,432,834	-				-1.2
1,432,834	-				-0.6
1,432,834	-				-0.9
1,432,834	-				-2.9
1,432,834	-				+2.6
1,432,834	-				-1.4
1,432,834	-				-1.6
1,432,834	-				-0.7
1,432,834	-				+0.9
1,432,834	-				+0.4
1,432,938	+		LRK54_RS06660	0.16	-0.4
1,433,031	+		LRK54_RS06660	0.25	-3.4
1,433,031	+		LRK54_RS06660	0.25	-1.1
1,433,031	+		LRK54_RS06660	0.25	-1.2
1,433,031	+		LRK54_RS06660	0.25	+2.3
1,433,031	+		LRK54_RS06660	0.25	+1.9
1,433,032	-		LRK54_RS06660	0.25	+0.3
1,433,032	-		LRK54_RS06660	0.25	-0.7
1,433,032	-		LRK54_RS06660	0.25	-0.8
1,433,032	-		LRK54_RS06660	0.25	-1.0
1,433,046	+		LRK54_RS06660	0.26	-0.2
1,433,046	+		LRK54_RS06660	0.26	+0.2
1,433,046	+		LRK54_RS06660	0.26	+1.5
1,433,046	+		LRK54_RS06660	0.26	+0.7
1,433,046	+		LRK54_RS06660	0.26	-1.0
1,433,047	-		LRK54_RS06660	0.27	+0.6
1,433,047	-		LRK54_RS06660	0.27	+0.6
1,433,047	-		LRK54_RS06660	0.27	+1.9
1,433,047	-		LRK54_RS06660	0.27	+0.0
1,433,047	-		LRK54_RS06660	0.27	-0.6
1,433,226	+		LRK54_RS06660	0.44	+0.9
1,433,226	+		LRK54_RS06660	0.44	-0.4
1,433,226	+		LRK54_RS06660	0.44	-1.0
1,433,226	+		LRK54_RS06660	0.44	+1.5
1,433,226	+		LRK54_RS06660	0.44	-0.1
1,433,226	+		LRK54_RS06660	0.44	+1.6
1,433,226	+		LRK54_RS06660	0.44	-0.8
1,433,226	+		LRK54_RS06660	0.44	+0.0
1,433,226	+		LRK54_RS06660	0.44	+0.7
1,433,227	-		LRK54_RS06660	0.44	-1.0
1,433,227	-		LRK54_RS06660	0.44	+0.7
1,433,227	-		LRK54_RS06660	0.44	-2.0
1,433,227	-		LRK54_RS06660	0.44	+1.6
1,433,227	-		LRK54_RS06660	0.44	+1.1
1,433,227	-		LRK54_RS06660	0.44	-1.9
1,433,253	+		LRK54_RS06660	0.47	-1.4
1,433,253	+		LRK54_RS06660	0.47	+1.6
1,433,253	+		LRK54_RS06660	0.47	+0.7
1,433,253	+		LRK54_RS06660	0.47	+0.6
1,433,254	-		LRK54_RS06660	0.47	-0.1
1,433,254	-		LRK54_RS06660	0.47	+1.9
1,433,254	-		LRK54_RS06660	0.47	-0.2
1,433,254	-		LRK54_RS06660	0.47	-0.7
1,433,254	-		LRK54_RS06660	0.47	-2.1
1,433,254	-		LRK54_RS06660	0.47	-2.0
1,433,254	-		LRK54_RS06660	0.47	+1.3
1,433,254	-		LRK54_RS06660	0.47	+0.1
1,433,298	+		LRK54_RS06660	0.51	-0.8
1,433,298	+		LRK54_RS06660	0.51	-1.4
1,433,298	+		LRK54_RS06660	0.51	-0.3
1,433,329	-		LRK54_RS06660	0.54	-0.8
1,433,547	+		LRK54_RS06660	0.75	+1.7
1,433,547	+		LRK54_RS06660	0.75	+1.3
1,433,829	+				+0.5
1,433,829	+				-0.2
1,433,829	+				-0.3
1,433,829	+				-1.7
1,433,829	+				-0.8
1,433,829	+				-0.8
1,433,829	+				+0.1
1,433,829	+				-1.2
1,433,829	+				+0.3
1,433,830	-				+0.7
1,433,830	-				-0.7
1,433,830	-				-2.9
1,433,830	-				-1.9
1,433,830	-				+0.0
1,433,830	-				+1.3
1,433,830	-				-2.4
1,433,830	-				-0.5
1,433,830	-				-0.3
1,433,830	-				+1.2
1,433,830	-				-0.7
1,433,830	-				-0.3
1,433,830	-				+0.5
1,433,830	-				+0.9
1,433,877	+				+0.6
1,433,877	+				+0.7
1,433,878	-				-1.0
1,433,878	-				+0.7
1,433,878	-				+1.6
1,433,878	-				-2.6
1,433,878	-				-0.3
1,433,878	-				-2.1
1,433,903	-				-0.7
1,434,182	-		LRK54_RS06665	0.19	-0.8
1,434,182	-		LRK54_RS06665	0.19	-1.9
1,434,250	+		LRK54_RS06665	0.26	+0.2
1,434,250	+		LRK54_RS06665	0.26	+2.3
1,434,250	+		LRK54_RS06665	0.26	+0.7
1,434,250	+		LRK54_RS06665	0.26	-0.3
1,434,250	+		LRK54_RS06665	0.26	+0.6
1,434,250	+		LRK54_RS06665	0.26	-1.9
1,434,250	+		LRK54_RS06665	0.26	-0.0
1,434,250	+		LRK54_RS06665	0.26	-1.2
1,434,250	+		LRK54_RS06665	0.26	+1.6
1,434,250	+		LRK54_RS06665	0.26	-1.4
1,434,250	+		LRK54_RS06665	0.26	-1.6
1,434,250	+		LRK54_RS06665	0.26	+0.5
1,434,250	+		LRK54_RS06665	0.26	-0.7
1,434,250	+		LRK54_RS06665	0.26	+2.3
1,434,250	+		LRK54_RS06665	0.26	-0.5
1,434,250	+		LRK54_RS06665	0.26	+1.1
1,434,250	+		LRK54_RS06665	0.26	+0.3
1,434,250	+		LRK54_RS06665	0.26	-0.6
1,434,250	+		LRK54_RS06665	0.26	+0.1
1,434,250	+		LRK54_RS06665	0.26	-0.1
1,434,251	-		LRK54_RS06665	0.26	-0.8
1,434,251	-		LRK54_RS06665	0.26	-2.6
1,434,251	-		LRK54_RS06665	0.26	-1.2
1,434,251	-		LRK54_RS06665	0.26	-2.4
1,434,251	-		LRK54_RS06665	0.26	+1.1
1,434,251	-		LRK54_RS06665	0.26	-0.7
1,434,251	-		LRK54_RS06665	0.26	+1.6
1,434,251	-		LRK54_RS06665	0.26	+2.3
1,434,251	-		LRK54_RS06665	0.26	-3.2
1,434,251	-		LRK54_RS06665	0.26	+1.3
1,434,251	-		LRK54_RS06665	0.26	-1.7
1,434,251	-		LRK54_RS06665	0.26	+0.0
1,434,251	-		LRK54_RS06665	0.26	+0.1
1,434,251	-		LRK54_RS06665	0.26	+0.2
1,434,251	-		LRK54_RS06665	0.26	-0.7
1,434,253	+		LRK54_RS06665	0.26	+1.1
1,434,253	+		LRK54_RS06665	0.26	-2.2
1,434,253	+		LRK54_RS06665	0.26	-1.7
1,434,253	+		LRK54_RS06665	0.26	-0.5
1,434,253	+		LRK54_RS06665	0.26	-0.1
1,434,254	-		LRK54_RS06665	0.26	+1.1
1,434,254	-		LRK54_RS06665	0.26	-2.2
1,434,254	-		LRK54_RS06665	0.26	-1.3
1,434,254	-		LRK54_RS06665	0.26	-2.1
1,434,254	-		LRK54_RS06665	0.26	-1.1
1,434,254	-		LRK54_RS06665	0.26	+0.1
1,434,254	-		LRK54_RS06665	0.26	+0.3
1,434,254	-		LRK54_RS06665	0.26	-1.5
1,434,254	-		LRK54_RS06665	0.26	-1.0
1,434,254	-		LRK54_RS06665	0.26	+0.2
1,434,254	-		LRK54_RS06665	0.26	-1.5
1,434,254	-		LRK54_RS06665	0.26	+0.1
1,434,763	+		LRK54_RS06665	0.76	+1.1
1,434,763	+		LRK54_RS06665	0.76	-2.0
1,434,763	+		LRK54_RS06665	0.76	-0.9
1,434,763	+		LRK54_RS06665	0.76	+1.1
1,434,763	+		LRK54_RS06665	0.76	-0.4
1,434,763	+		LRK54_RS06665	0.76	+1.3
1,434,763	+		LRK54_RS06665	0.76	+0.4
1,434,763	+		LRK54_RS06665	0.76	+1.1
1,434,763	+		LRK54_RS06665	0.76	+0.9
1,434,763	+		LRK54_RS06665	0.76	+0.0
1,434,763	+		LRK54_RS06665	0.76	-0.8
1,434,763	+		LRK54_RS06665	0.76	+0.3
1,434,763	+		LRK54_RS06665	0.76	-3.8
1,434,763	+		LRK54_RS06665	0.76	+1.4
1,434,763	+		LRK54_RS06665	0.76	-0.5
1,434,763	+		LRK54_RS06665	0.76	-0.3
1,434,763	+		LRK54_RS06665	0.76	-0.9
1,434,763	+		LRK54_RS06665	0.76	-0.7
1,434,764	-		LRK54_RS06665	0.76	+1.3
1,434,764	-		LRK54_RS06665	0.76	+0.7
1,434,764	-		LRK54_RS06665	0.76	+0.6
1,434,764	-		LRK54_RS06665	0.76	+0.5
1,434,764	-		LRK54_RS06665	0.76	-0.9
1,434,764	-		LRK54_RS06665	0.76	-2.2
1,434,764	-		LRK54_RS06665	0.76	-1.8
1,434,764	-		LRK54_RS06665	0.76	-0.6
1,434,764	-		LRK54_RS06665	0.76	+1.3
1,434,764	-		LRK54_RS06665	0.76	-0.5
1,434,764	-		LRK54_RS06665	0.76	-2.2
1,434,764	-		LRK54_RS06665	0.76	+0.2
1,434,764	-		LRK54_RS06665	0.76	-1.2
1,434,764	-		LRK54_RS06665	0.76	+1.1
1,434,764	-		LRK54_RS06665	0.76	+0.7
1,434,764	-		LRK54_RS06665	0.76	-0.6
1,434,764	-		LRK54_RS06665	0.76	+0.6
1,434,764	-		LRK54_RS06665	0.76	-1.0
1,434,764	-		LRK54_RS06665	0.76	-0.8