Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS25425 and CA265_RS25430 are separated by 1 nucleotides CA265_RS25430 and CA265_RS25435 are separated by 0 nucleotides CA265_RS25435 and CA265_RS25440 are separated by 17 nucleotides
CA265_RS25425: CA265_RS25425 - NAD-dependent dehydratase, at 6,173,981 to 6,175,009
_RS25425
CA265_RS25430: CA265_RS25430 - UDP-glucose 4-epimerase GalE, at 6,175,011 to 6,176,033
_RS25430
CA265_RS25435: CA265_RS25435 - hypothetical protein, at 6,176,034 to 6,176,591
_RS25435
CA265_RS25440: CA265_RS25440 - capsular biosynthesis protein, at 6,176,609 to 6,177,346
_RS25440
Position (kb)
6175
6176
6177 Strain fitness (log2 ratio)
-1
0
1 at 6176.016 kb on - strand at 6176.105 kb on - strand, within CA265_RS25435 at 6176.306 kb on + strand, within CA265_RS25435 at 6176.455 kb on + strand, within CA265_RS25435 at 6176.459 kb on + strand, within CA265_RS25435 at 6176.513 kb on + strand, within CA265_RS25435 at 6176.525 kb on + strand, within CA265_RS25435 at 6176.540 kb on + strand at 6176.545 kb on + strand at 6176.603 kb on - strand at 6176.760 kb on + strand, within CA265_RS25440 at 6176.909 kb on + strand, within CA265_RS25440 at 6176.956 kb on - strand, within CA265_RS25440 at 6176.989 kb on - strand, within CA265_RS25440 at 6176.989 kb on - strand, within CA265_RS25440 at 6177.026 kb on - strand, within CA265_RS25440 at 6177.028 kb on - strand, within CA265_RS25440
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 6,176,016 - -1.2 6,176,105 - CA265_RS25435 0.13 -1.7 6,176,306 + CA265_RS25435 0.49 -1.6 6,176,455 + CA265_RS25435 0.75 -1.0 6,176,459 + CA265_RS25435 0.76 +0.6 6,176,513 + CA265_RS25435 0.86 +0.3 6,176,525 + CA265_RS25435 0.88 +0.5 6,176,540 + +0.8 6,176,545 + +0.4 6,176,603 - +1.2 6,176,760 + CA265_RS25440 0.20 +1.2 6,176,909 + CA265_RS25440 0.41 -0.3 6,176,956 - CA265_RS25440 0.47 +0.1 6,176,989 - CA265_RS25440 0.51 +0.4 6,176,989 - CA265_RS25440 0.51 +0.3 6,177,026 - CA265_RS25440 0.57 +0.7 6,177,028 - CA265_RS25440 0.57 +0.6
Or see this region's nucleotide sequence