Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24635

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
6,005,233	+		CA265_RS24630	0.67	-0.3
6,005,233	+		CA265_RS24630	0.67	-1.0
6,005,234	-		CA265_RS24630	0.67	-2.1
6,005,281	-		CA265_RS24630	0.69	-1.2
6,005,283	+		CA265_RS24630	0.69	-1.8
6,005,287	+		CA265_RS24630	0.69	-1.5
6,005,290	-		CA265_RS24630	0.69	-0.0
6,005,290	-		CA265_RS24630	0.69	-1.0
6,005,305	+		CA265_RS24630	0.69	-3.0
6,005,329	+		CA265_RS24630	0.70	-2.7
6,005,330	-		CA265_RS24630	0.70	-1.0
6,005,330	-		CA265_RS24630	0.70	-1.5
6,005,347	+		CA265_RS24630	0.71	-3.4
6,005,370	-		CA265_RS24630	0.72	-1.3
6,005,460	-		CA265_RS24630	0.75	-2.3
6,005,493	+		CA265_RS24630	0.76	-3.3
6,005,513	+		CA265_RS24630	0.76	-1.7
6,005,514	-		CA265_RS24630	0.76	-2.8
6,005,524	+		CA265_RS24630	0.77	-1.8
6,005,593	-		CA265_RS24630	0.79	-1.2
6,005,593	-		CA265_RS24630	0.79	-1.5
6,005,731	-		CA265_RS24630	0.84	-1.2
6,005,737	-		CA265_RS24630	0.84	-1.0
6,005,761	-		CA265_RS24630	0.85	-1.7
6,005,826	+		CA265_RS24630	0.87	-2.9
6,005,827	-		CA265_RS24630	0.87	-0.6
6,005,827	-		CA265_RS24630	0.87	-0.5
6,005,837	+		CA265_RS24630	0.87	-3.2
6,005,858	-		CA265_RS24630	0.88	-2.1
6,005,945	+				-2.1
6,005,945	+				-3.4
6,005,953	-				-1.3
6,005,986	+				-3.2
6,005,987	-				-0.5
6,005,989	+				-2.3
6,005,991	+				-1.3
6,006,027	-				-2.1
6,006,038	-				-1.1
6,006,038	-				-1.1
6,006,039	+				-2.4
6,006,040	-				-2.0
6,006,161	-				-1.7
6,006,161	-				-0.7
6,006,162	+				-0.3
6,006,163	-				+1.4
6,006,187	+				-2.9
6,006,188	-				-1.0
6,006,195	-				-2.0
6,006,253	+				-0.7
6,006,277	+				-0.8
6,006,277	+				-1.8
6,006,342	-				-0.1
6,006,367	-				+1.0
6,006,391	-				-0.8
6,006,406	+		CA265_RS24635	0.11	-0.8
6,006,406	+		CA265_RS24635	0.11	-1.2
6,006,407	-		CA265_RS24635	0.11	-1.5
6,006,428	+		CA265_RS24635	0.12	-0.1
6,006,429	-		CA265_RS24635	0.12	-0.6
6,006,448	+		CA265_RS24635	0.14	-1.3
6,006,449	-		CA265_RS24635	0.14	-2.4
6,006,521	+		CA265_RS24635	0.18	-2.3
6,006,608	+		CA265_RS24635	0.23	-1.3
6,006,640	+		CA265_RS24635	0.25	-0.8
6,006,675	-		CA265_RS24635	0.28	-0.6
6,006,675	-		CA265_RS24635	0.28	-2.6
6,006,761	-		CA265_RS24635	0.33	-2.5
6,006,852	+		CA265_RS24635	0.39	-2.8
6,006,961	-		CA265_RS24635	0.45	-1.2
6,006,978	+		CA265_RS24635	0.47	-1.5
6,006,987	-		CA265_RS24635	0.47	-1.7
6,007,014	+		CA265_RS24635	0.49	-3.2
6,007,015	-		CA265_RS24635	0.49	-2.0
6,007,015	-		CA265_RS24635	0.49	-2.1
6,007,022	+		CA265_RS24635	0.49	+0.7
6,007,029	-		CA265_RS24635	0.50	-0.5
6,007,049	-		CA265_RS24635	0.51	-2.0
6,007,119	-		CA265_RS24635	0.55	-1.6
6,007,147	-		CA265_RS24635	0.57	-1.2
6,007,154	+		CA265_RS24635	0.58	-2.4
6,007,182	+		CA265_RS24635	0.59	-2.0
6,007,206	-		CA265_RS24635	0.61	+0.2
6,007,221	+		CA265_RS24635	0.62	-1.5
6,007,290	-		CA265_RS24635	0.66	-0.3
6,007,301	+		CA265_RS24635	0.67	-2.3
6,007,302	-		CA265_RS24635	0.67	-2.0
6,007,307	+		CA265_RS24635	0.67	-3.3
6,007,343	-		CA265_RS24635	0.69	-0.8
6,007,480	-		CA265_RS24635	0.78	-1.2
6,007,484	+		CA265_RS24635	0.78	-1.4
6,007,488	+		CA265_RS24635	0.78	-2.1
6,007,524	-		CA265_RS24635	0.81	-1.5
6,007,524	-		CA265_RS24635	0.81	+0.4
6,007,528	+		CA265_RS24635	0.81	-1.5
6,007,554	-		CA265_RS24635	0.82	-2.8
6,007,609	+		CA265_RS24635	0.86	-1.2
6,007,710	+				-0.6
6,007,735	+				-2.3
6,007,748	+				-0.5
6,007,767	-				-1.2
6,007,879	-				-1.7
6,007,941	+				-0.8
6,007,960	+		CA265_RS24640	0.11	+0.5
6,007,961	-		CA265_RS24640	0.11	-0.5
6,007,981	-		CA265_RS24640	0.13	-1.9
6,007,986	+		CA265_RS24640	0.14	-0.4
6,007,987	-		CA265_RS24640	0.14	-1.4
6,007,989	+		CA265_RS24640	0.14	-0.7
6,008,072	-		CA265_RS24640	0.23	-1.6
6,008,132	-		CA265_RS24640	0.29	-1.6
6,008,141	+		CA265_RS24640	0.29	-1.0
6,008,164	+		CA265_RS24640	0.32	-1.4
6,008,167	+		CA265_RS24640	0.32	-0.5
6,008,194	+		CA265_RS24640	0.35	-1.7
6,008,195	-		CA265_RS24640	0.35	-1.3
6,008,220	+		CA265_RS24640	0.37	-0.4
6,008,258	+		CA265_RS24640	0.41	-1.1
6,008,258	+		CA265_RS24640	0.41	-1.7
6,008,263	+		CA265_RS24640	0.42	-2.8
6,008,273	-		CA265_RS24640	0.43	-2.9
6,008,312	+		CA265_RS24640	0.47	-1.7
6,008,313	-		CA265_RS24640	0.47	-0.7
6,008,313	-		CA265_RS24640	0.47	-0.8
6,008,317	-		CA265_RS24640	0.47	-0.3
6,008,328	-		CA265_RS24640	0.48	-1.0
6,008,388	-		CA265_RS24640	0.54	-1.4
6,008,429	-		CA265_RS24640	0.58	-1.5
6,008,452	-		CA265_RS24640	0.61	-1.7
6,008,456	+		CA265_RS24640	0.61	-0.9
6,008,482	+		CA265_RS24640	0.64	-2.2
6,008,482	+		CA265_RS24640	0.64	-1.1
6,008,482	+		CA265_RS24640	0.64	-2.6
6,008,483	-		CA265_RS24640	0.64	-1.1
6,008,614	+		CA265_RS24640	0.77	-0.6
6,008,625	+		CA265_RS24640	0.78	-0.8
6,008,645	-		CA265_RS24640	0.80	-0.3