Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23335 and CA265_RS23340 are separated by 46 nucleotides CA265_RS23340 and CA265_RS23345 are separated by 18 nucleotides
CA265_RS23335: CA265_RS23335 - hypothetical protein, at 5,709,022 to 5,712,264
_RS23335
CA265_RS23340: CA265_RS23340 - glycoside hydrolase family 2, at 5,712,311 to 5,715,100
_RS23340
CA265_RS23345: CA265_RS23345 - hypothetical protein, at 5,715,119 to 5,716,207
_RS23345
Position (kb) 5712
5713
5714
5715
5716 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5711.311 kb on - strand, within CA265_RS23335 at 5711.311 kb on - strand, within CA265_RS23335 at 5711.364 kb on + strand, within CA265_RS23335 at 5711.445 kb on + strand, within CA265_RS23335 at 5711.446 kb on - strand, within CA265_RS23335 at 5711.506 kb on + strand, within CA265_RS23335 at 5711.508 kb on + strand, within CA265_RS23335 at 5711.531 kb on - strand, within CA265_RS23335 at 5711.540 kb on + strand, within CA265_RS23335 at 5711.574 kb on - strand, within CA265_RS23335 at 5711.574 kb on - strand, within CA265_RS23335 at 5711.634 kb on - strand, within CA265_RS23335 at 5711.644 kb on - strand, within CA265_RS23335 at 5711.709 kb on + strand, within CA265_RS23335 at 5711.710 kb on - strand, within CA265_RS23335 at 5711.710 kb on - strand, within CA265_RS23335 at 5711.724 kb on + strand, within CA265_RS23335 at 5711.724 kb on + strand, within CA265_RS23335 at 5711.776 kb on - strand, within CA265_RS23335 at 5711.776 kb on - strand, within CA265_RS23335 at 5711.820 kb on - strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.878 kb on - strand, within CA265_RS23335 at 5711.899 kb on - strand, within CA265_RS23335 at 5711.935 kb on - strand, within CA265_RS23335 at 5711.935 kb on - strand, within CA265_RS23335 at 5711.946 kb on - strand at 5712.010 kb on - strand at 5712.010 kb on - strand at 5712.013 kb on - strand at 5712.098 kb on + strand at 5712.099 kb on - strand at 5712.136 kb on - strand at 5712.150 kb on - strand at 5712.156 kb on - strand at 5712.156 kb on - strand at 5712.160 kb on - strand at 5712.175 kb on - strand at 5712.197 kb on + strand at 5712.197 kb on + strand at 5712.203 kb on + strand at 5712.276 kb on - strand at 5712.277 kb on + strand at 5712.282 kb on - strand at 5712.282 kb on - strand at 5712.297 kb on - strand at 5712.409 kb on - strand at 5712.582 kb on + strand at 5712.582 kb on + strand at 5712.583 kb on - strand at 5712.612 kb on - strand, within CA265_RS23340 at 5712.612 kb on - strand, within CA265_RS23340 at 5712.629 kb on + strand, within CA265_RS23340 at 5712.646 kb on + strand, within CA265_RS23340 at 5712.676 kb on - strand, within CA265_RS23340 at 5712.696 kb on + strand, within CA265_RS23340 at 5712.696 kb on + strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.741 kb on + strand, within CA265_RS23340 at 5712.757 kb on + strand, within CA265_RS23340 at 5712.808 kb on + strand, within CA265_RS23340 at 5712.809 kb on - strand, within CA265_RS23340 at 5712.815 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.866 kb on + strand, within CA265_RS23340 at 5712.900 kb on + strand, within CA265_RS23340 at 5712.913 kb on - strand, within CA265_RS23340 at 5712.913 kb on - strand, within CA265_RS23340 at 5713.045 kb on - strand, within CA265_RS23340 at 5713.111 kb on - strand, within CA265_RS23340 at 5713.115 kb on - strand, within CA265_RS23340 at 5713.127 kb on + strand, within CA265_RS23340 at 5713.179 kb on + strand, within CA265_RS23340 at 5713.179 kb on + strand, within CA265_RS23340 at 5713.213 kb on + strand, within CA265_RS23340 at 5713.222 kb on + strand, within CA265_RS23340 at 5713.262 kb on - strand, within CA265_RS23340 at 5713.398 kb on - strand, within CA265_RS23340 at 5713.508 kb on - strand, within CA265_RS23340 at 5713.513 kb on - strand, within CA265_RS23340 at 5713.688 kb on + strand, within CA265_RS23340 at 5713.689 kb on - strand, within CA265_RS23340 at 5713.689 kb on - strand, within CA265_RS23340 at 5713.689 kb on - strand, within CA265_RS23340 at 5713.690 kb on + strand, within CA265_RS23340 at 5713.691 kb on - strand, within CA265_RS23340 at 5713.825 kb on + strand, within CA265_RS23340 at 5713.852 kb on + strand, within CA265_RS23340 at 5713.852 kb on + strand, within CA265_RS23340 at 5713.853 kb on - strand, within CA265_RS23340 at 5713.853 kb on - strand, within CA265_RS23340 at 5713.892 kb on + strand, within CA265_RS23340 at 5713.892 kb on + strand, within CA265_RS23340 at 5713.892 kb on + strand, within CA265_RS23340 at 5713.902 kb on - strand, within CA265_RS23340 at 5713.929 kb on - strand, within CA265_RS23340 at 5713.939 kb on - strand, within CA265_RS23340 at 5713.967 kb on - strand, within CA265_RS23340 at 5714.001 kb on + strand, within CA265_RS23340 at 5714.252 kb on + strand, within CA265_RS23340 at 5714.253 kb on - strand, within CA265_RS23340 at 5714.395 kb on + strand, within CA265_RS23340 at 5714.428 kb on + strand, within CA265_RS23340 at 5714.428 kb on + strand, within CA265_RS23340 at 5714.444 kb on - strand, within CA265_RS23340 at 5714.473 kb on - strand, within CA265_RS23340 at 5714.478 kb on + strand, within CA265_RS23340 at 5714.478 kb on + strand, within CA265_RS23340 at 5714.500 kb on + strand, within CA265_RS23340 at 5714.501 kb on - strand, within CA265_RS23340 at 5714.501 kb on - strand, within CA265_RS23340 at 5714.525 kb on + strand, within CA265_RS23340 at 5714.548 kb on - strand, within CA265_RS23340 at 5714.552 kb on - strand, within CA265_RS23340 at 5714.623 kb on - strand, within CA265_RS23340 at 5714.659 kb on + strand, within CA265_RS23340 at 5714.667 kb on + strand, within CA265_RS23340 at 5714.711 kb on - strand, within CA265_RS23340 at 5714.762 kb on - strand, within CA265_RS23340 at 5714.774 kb on - strand, within CA265_RS23340 at 5714.828 kb on - strand at 5714.830 kb on + strand at 5714.832 kb on + strand at 5714.833 kb on - strand at 5714.867 kb on - strand at 5714.944 kb on + strand at 5715.015 kb on - strand at 5715.159 kb on - strand at 5715.159 kb on - strand at 5715.187 kb on + strand at 5715.192 kb on - strand at 5715.256 kb on - strand, within CA265_RS23345 at 5715.274 kb on + strand, within CA265_RS23345 at 5715.330 kb on + strand, within CA265_RS23345 at 5715.343 kb on + strand, within CA265_RS23345 at 5715.436 kb on - strand, within CA265_RS23345 at 5715.436 kb on - strand, within CA265_RS23345 at 5715.475 kb on + strand, within CA265_RS23345 at 5715.717 kb on - strand, within CA265_RS23345 at 5715.717 kb on - strand, within CA265_RS23345 at 5715.753 kb on - strand, within CA265_RS23345 at 5715.770 kb on - strand at 5715.873 kb on + strand, within CA265_RS23345 at 5715.915 kb on + strand, within CA265_RS23345 at 5715.915 kb on + strand, within CA265_RS23345 at 5715.931 kb on - strand, within CA265_RS23345 at 5715.931 kb on - strand, within CA265_RS23345 at 5715.931 kb on - strand, within CA265_RS23345 at 5715.953 kb on + strand, within CA265_RS23345 at 5715.953 kb on + strand, within CA265_RS23345 at 5715.954 kb on - strand, within CA265_RS23345 at 5716.052 kb on + strand, within CA265_RS23345 at 5716.052 kb on + strand, within CA265_RS23345 at 5716.056 kb on + strand, within CA265_RS23345 at 5716.057 kb on - strand, within CA265_RS23345 at 5716.058 kb on + strand, within CA265_RS23345 at 5716.059 kb on - strand, within CA265_RS23345 at 5716.086 kb on - strand, within CA265_RS23345
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,711,311 - CA265_RS23335 0.71 +0.1 5,711,311 - CA265_RS23335 0.71 +0.7 5,711,364 + CA265_RS23335 0.72 -0.7 5,711,445 + CA265_RS23335 0.75 +0.8 5,711,446 - CA265_RS23335 0.75 -0.2 5,711,506 + CA265_RS23335 0.77 -0.4 5,711,508 + CA265_RS23335 0.77 -0.7 5,711,531 - CA265_RS23335 0.77 -0.6 5,711,540 + CA265_RS23335 0.78 -1.6 5,711,574 - CA265_RS23335 0.79 +0.1 5,711,574 - CA265_RS23335 0.79 -2.5 5,711,634 - CA265_RS23335 0.81 +0.1 5,711,644 - CA265_RS23335 0.81 +0.2 5,711,709 + CA265_RS23335 0.83 -0.3 5,711,710 - CA265_RS23335 0.83 +0.2 5,711,710 - CA265_RS23335 0.83 -1.0 5,711,724 + CA265_RS23335 0.83 +1.0 5,711,724 + CA265_RS23335 0.83 -0.4 5,711,776 - CA265_RS23335 0.85 +0.6 5,711,776 - CA265_RS23335 0.85 -1.0 5,711,820 - CA265_RS23335 0.86 +0.4 5,711,877 + CA265_RS23335 0.88 -0.3 5,711,877 + CA265_RS23335 0.88 -2.0 5,711,877 + CA265_RS23335 0.88 +0.4 5,711,878 - CA265_RS23335 0.88 +2.0 5,711,899 - CA265_RS23335 0.89 +0.3 5,711,935 - CA265_RS23335 0.90 +0.2 5,711,935 - CA265_RS23335 0.90 +1.0 5,711,946 - +0.5 5,712,010 - -1.1 5,712,010 - -0.6 5,712,013 - +0.6 5,712,098 + +0.6 5,712,099 - -1.2 5,712,136 - -0.0 5,712,150 - +0.3 5,712,156 - -0.4 5,712,156 - +0.3 5,712,160 - -0.8 5,712,175 - -0.6 5,712,197 + +2.8 5,712,197 + -0.7 5,712,203 + +0.2 5,712,276 - -0.6 5,712,277 + -0.6 5,712,282 - +0.8 5,712,282 - +0.4 5,712,297 - -1.3 5,712,409 - -0.6 5,712,582 + -1.2 5,712,582 + -0.8 5,712,583 - +0.2 5,712,612 - CA265_RS23340 0.11 -1.0 5,712,612 - CA265_RS23340 0.11 -0.1 5,712,629 + CA265_RS23340 0.11 +0.8 5,712,646 + CA265_RS23340 0.12 +0.0 5,712,676 - CA265_RS23340 0.13 +2.0 5,712,696 + CA265_RS23340 0.14 +1.5 5,712,696 + CA265_RS23340 0.14 +0.6 5,712,715 - CA265_RS23340 0.14 +0.3 5,712,715 - CA265_RS23340 0.14 +0.1 5,712,715 - CA265_RS23340 0.14 -1.7 5,712,741 + CA265_RS23340 0.15 +0.6 5,712,757 + CA265_RS23340 0.16 -0.9 5,712,808 + CA265_RS23340 0.18 +0.6 5,712,809 - CA265_RS23340 0.18 -0.0 5,712,815 - CA265_RS23340 0.18 +1.0 5,712,836 - CA265_RS23340 0.19 +0.5 5,712,836 - CA265_RS23340 0.19 +0.4 5,712,836 - CA265_RS23340 0.19 -0.2 5,712,866 + CA265_RS23340 0.20 +1.3 5,712,900 + CA265_RS23340 0.21 +0.3 5,712,913 - CA265_RS23340 0.22 -0.8 5,712,913 - CA265_RS23340 0.22 +0.2 5,713,045 - CA265_RS23340 0.26 -0.2 5,713,111 - CA265_RS23340 0.29 -0.7 5,713,115 - CA265_RS23340 0.29 -0.9 5,713,127 + CA265_RS23340 0.29 +0.4 5,713,179 + CA265_RS23340 0.31 +0.6 5,713,179 + CA265_RS23340 0.31 +1.2 5,713,213 + CA265_RS23340 0.32 +2.7 5,713,222 + CA265_RS23340 0.33 +0.8 5,713,262 - CA265_RS23340 0.34 -0.6 5,713,398 - CA265_RS23340 0.39 -0.1 5,713,508 - CA265_RS23340 0.43 -0.4 5,713,513 - CA265_RS23340 0.43 +0.0 5,713,688 + CA265_RS23340 0.49 +0.5 5,713,689 - CA265_RS23340 0.49 +0.4 5,713,689 - CA265_RS23340 0.49 +1.0 5,713,689 - CA265_RS23340 0.49 -0.3 5,713,690 + CA265_RS23340 0.49 -0.3 5,713,691 - CA265_RS23340 0.49 +0.2 5,713,825 + CA265_RS23340 0.54 +0.6 5,713,852 + CA265_RS23340 0.55 +0.7 5,713,852 + CA265_RS23340 0.55 +2.0 5,713,853 - CA265_RS23340 0.55 -0.6 5,713,853 - CA265_RS23340 0.55 -0.0 5,713,892 + CA265_RS23340 0.57 -0.9 5,713,892 + CA265_RS23340 0.57 -1.5 5,713,892 + CA265_RS23340 0.57 -0.1 5,713,902 - CA265_RS23340 0.57 +0.1 5,713,929 - CA265_RS23340 0.58 -0.1 5,713,939 - CA265_RS23340 0.58 -2.1 5,713,967 - CA265_RS23340 0.59 -0.1 5,714,001 + CA265_RS23340 0.61 +0.4 5,714,252 + CA265_RS23340 0.70 +0.8 5,714,253 - CA265_RS23340 0.70 -0.1 5,714,395 + CA265_RS23340 0.75 +0.5 5,714,428 + CA265_RS23340 0.76 -1.0 5,714,428 + CA265_RS23340 0.76 -0.2 5,714,444 - CA265_RS23340 0.76 -1.4 5,714,473 - CA265_RS23340 0.77 +0.6 5,714,478 + CA265_RS23340 0.78 +0.4 5,714,478 + CA265_RS23340 0.78 +0.6 5,714,500 + CA265_RS23340 0.78 +0.3 5,714,501 - CA265_RS23340 0.78 +1.1 5,714,501 - CA265_RS23340 0.78 +0.9 5,714,525 + CA265_RS23340 0.79 +0.6 5,714,548 - CA265_RS23340 0.80 -0.4 5,714,552 - CA265_RS23340 0.80 +0.0 5,714,623 - CA265_RS23340 0.83 +0.4 5,714,659 + CA265_RS23340 0.84 +0.6 5,714,667 + CA265_RS23340 0.84 +0.3 5,714,711 - CA265_RS23340 0.86 -0.3 5,714,762 - CA265_RS23340 0.88 +0.6 5,714,774 - CA265_RS23340 0.88 -0.1 5,714,828 - -0.4 5,714,830 + +1.1 5,714,832 + -0.5 5,714,833 - -1.5 5,714,867 - +0.2 5,714,944 + +0.3 5,715,015 - +0.1 5,715,159 - +0.3 5,715,159 - +0.3 5,715,187 + +0.3 5,715,192 - +0.3 5,715,256 - CA265_RS23345 0.13 -0.1 5,715,274 + CA265_RS23345 0.14 -0.6 5,715,330 + CA265_RS23345 0.19 +0.8 5,715,343 + CA265_RS23345 0.21 +1.0 5,715,436 - CA265_RS23345 0.29 -0.2 5,715,436 - CA265_RS23345 0.29 -0.5 5,715,475 + CA265_RS23345 0.33 -1.8 5,715,717 - CA265_RS23345 0.55 -0.9 5,715,717 - CA265_RS23345 0.55 -1.6 5,715,753 - CA265_RS23345 0.58 -1.4 5,715,770 - -0.0 5,715,873 + CA265_RS23345 0.69 -0.4 5,715,915 + CA265_RS23345 0.73 -0.5 5,715,915 + CA265_RS23345 0.73 -0.7 5,715,931 - CA265_RS23345 0.75 +0.8 5,715,931 - CA265_RS23345 0.75 -0.1 5,715,931 - CA265_RS23345 0.75 -0.7 5,715,953 + CA265_RS23345 0.77 +0.4 5,715,953 + CA265_RS23345 0.77 +0.1 5,715,954 - CA265_RS23345 0.77 -0.7 5,716,052 + CA265_RS23345 0.86 -0.5 5,716,052 + CA265_RS23345 0.86 +1.0 5,716,056 + CA265_RS23345 0.86 +0.3 5,716,057 - CA265_RS23345 0.86 -0.1 5,716,058 + CA265_RS23345 0.86 -0.4 5,716,059 - CA265_RS23345 0.86 -0.0 5,716,086 - CA265_RS23345 0.89 +0.3
Or see this region's nucleotide sequence