Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23330 and CA265_RS23335 are separated by 101 nucleotides CA265_RS23335 and CA265_RS23340 are separated by 46 nucleotides
CA265_RS23330: CA265_RS23330 - DUF5107 domain-containing protein, at 5,705,603 to 5,708,920
_RS23330
CA265_RS23335: CA265_RS23335 - hypothetical protein, at 5,709,022 to 5,712,264
_RS23335
CA265_RS23340: CA265_RS23340 - glycoside hydrolase family 2, at 5,712,311 to 5,715,100
_RS23340
Position (kb) 5709
5710
5711
5712
5713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5708.092 kb on - strand, within CA265_RS23330 at 5708.092 kb on - strand, within CA265_RS23330 at 5708.124 kb on + strand, within CA265_RS23330 at 5708.199 kb on - strand, within CA265_RS23330 at 5708.212 kb on + strand, within CA265_RS23330 at 5708.213 kb on - strand, within CA265_RS23330 at 5708.218 kb on - strand, within CA265_RS23330 at 5708.250 kb on + strand, within CA265_RS23330 at 5708.299 kb on + strand, within CA265_RS23330 at 5708.299 kb on + strand, within CA265_RS23330 at 5708.331 kb on + strand, within CA265_RS23330 at 5708.403 kb on + strand, within CA265_RS23330 at 5708.403 kb on + strand, within CA265_RS23330 at 5708.403 kb on + strand, within CA265_RS23330 at 5708.404 kb on - strand, within CA265_RS23330 at 5708.404 kb on - strand, within CA265_RS23330 at 5708.436 kb on - strand, within CA265_RS23330 at 5708.463 kb on - strand, within CA265_RS23330 at 5708.476 kb on - strand, within CA265_RS23330 at 5708.490 kb on + strand, within CA265_RS23330 at 5708.491 kb on - strand, within CA265_RS23330 at 5708.491 kb on - strand, within CA265_RS23330 at 5708.517 kb on - strand, within CA265_RS23330 at 5708.560 kb on + strand, within CA265_RS23330 at 5708.562 kb on + strand, within CA265_RS23330 at 5708.563 kb on - strand, within CA265_RS23330 at 5708.567 kb on + strand, within CA265_RS23330 at 5708.629 kb on + strand at 5708.630 kb on - strand at 5708.662 kb on - strand at 5708.684 kb on - strand at 5708.784 kb on - strand at 5708.784 kb on - strand at 5708.803 kb on + strand at 5708.804 kb on - strand at 5708.839 kb on + strand at 5708.840 kb on - strand at 5708.840 kb on - strand at 5708.840 kb on - strand at 5708.925 kb on - strand at 5708.925 kb on - strand at 5708.929 kb on - strand at 5708.932 kb on - strand at 5708.977 kb on - strand at 5708.977 kb on - strand at 5709.031 kb on + strand at 5709.084 kb on - strand at 5709.087 kb on + strand at 5709.091 kb on - strand at 5709.102 kb on + strand at 5709.148 kb on - strand at 5709.152 kb on + strand at 5709.152 kb on + strand at 5709.153 kb on - strand at 5709.153 kb on - strand at 5709.204 kb on - strand at 5709.241 kb on - strand at 5709.267 kb on + strand at 5709.268 kb on - strand at 5709.280 kb on - strand at 5709.280 kb on - strand at 5709.280 kb on - strand at 5709.386 kb on + strand, within CA265_RS23335 at 5709.389 kb on - strand, within CA265_RS23335 at 5709.389 kb on - strand, within CA265_RS23335 at 5709.417 kb on - strand, within CA265_RS23335 at 5709.427 kb on + strand, within CA265_RS23335 at 5709.427 kb on + strand, within CA265_RS23335 at 5709.427 kb on + strand, within CA265_RS23335 at 5709.470 kb on + strand, within CA265_RS23335 at 5709.471 kb on - strand, within CA265_RS23335 at 5709.474 kb on + strand, within CA265_RS23335 at 5709.475 kb on - strand, within CA265_RS23335 at 5709.510 kb on + strand, within CA265_RS23335 at 5709.511 kb on - strand, within CA265_RS23335 at 5709.659 kb on + strand, within CA265_RS23335 at 5709.659 kb on + strand, within CA265_RS23335 at 5709.714 kb on + strand, within CA265_RS23335 at 5709.743 kb on + strand, within CA265_RS23335 at 5709.744 kb on - strand, within CA265_RS23335 at 5709.799 kb on - strand, within CA265_RS23335 at 5709.826 kb on - strand, within CA265_RS23335 at 5709.854 kb on + strand, within CA265_RS23335 at 5709.929 kb on + strand, within CA265_RS23335 at 5709.974 kb on - strand, within CA265_RS23335 at 5710.147 kb on - strand, within CA265_RS23335 at 5710.150 kb on + strand, within CA265_RS23335 at 5710.151 kb on - strand, within CA265_RS23335 at 5710.293 kb on + strand, within CA265_RS23335 at 5710.294 kb on - strand, within CA265_RS23335 at 5710.298 kb on + strand, within CA265_RS23335 at 5710.302 kb on + strand, within CA265_RS23335 at 5710.303 kb on - strand, within CA265_RS23335 at 5710.303 kb on - strand, within CA265_RS23335 at 5710.421 kb on + strand, within CA265_RS23335 at 5710.423 kb on + strand, within CA265_RS23335 at 5710.423 kb on + strand, within CA265_RS23335 at 5710.424 kb on - strand, within CA265_RS23335 at 5710.424 kb on - strand, within CA265_RS23335 at 5710.465 kb on + strand, within CA265_RS23335 at 5710.466 kb on - strand, within CA265_RS23335 at 5710.466 kb on - strand, within CA265_RS23335 at 5710.521 kb on + strand, within CA265_RS23335 at 5710.563 kb on + strand, within CA265_RS23335 at 5710.563 kb on + strand, within CA265_RS23335 at 5710.564 kb on - strand, within CA265_RS23335 at 5710.630 kb on + strand, within CA265_RS23335 at 5710.749 kb on - strand, within CA265_RS23335 at 5710.750 kb on + strand, within CA265_RS23335 at 5710.753 kb on - strand, within CA265_RS23335 at 5710.823 kb on - strand, within CA265_RS23335 at 5710.856 kb on + strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.065 kb on - strand, within CA265_RS23335 at 5711.168 kb on - strand, within CA265_RS23335 at 5711.169 kb on + strand, within CA265_RS23335 at 5711.170 kb on - strand, within CA265_RS23335 at 5711.222 kb on - strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.266 kb on + strand, within CA265_RS23335 at 5711.267 kb on - strand, within CA265_RS23335 at 5711.267 kb on - strand, within CA265_RS23335 at 5711.286 kb on + strand, within CA265_RS23335 at 5711.289 kb on + strand, within CA265_RS23335 at 5711.299 kb on - strand, within CA265_RS23335 at 5711.299 kb on - strand, within CA265_RS23335 at 5711.311 kb on - strand, within CA265_RS23335 at 5711.311 kb on - strand, within CA265_RS23335 at 5711.364 kb on + strand, within CA265_RS23335 at 5711.445 kb on + strand, within CA265_RS23335 at 5711.446 kb on - strand, within CA265_RS23335 at 5711.506 kb on + strand, within CA265_RS23335 at 5711.508 kb on + strand, within CA265_RS23335 at 5711.531 kb on - strand, within CA265_RS23335 at 5711.540 kb on + strand, within CA265_RS23335 at 5711.574 kb on - strand, within CA265_RS23335 at 5711.574 kb on - strand, within CA265_RS23335 at 5711.634 kb on - strand, within CA265_RS23335 at 5711.644 kb on - strand, within CA265_RS23335 at 5711.709 kb on + strand, within CA265_RS23335 at 5711.710 kb on - strand, within CA265_RS23335 at 5711.710 kb on - strand, within CA265_RS23335 at 5711.724 kb on + strand, within CA265_RS23335 at 5711.724 kb on + strand, within CA265_RS23335 at 5711.776 kb on - strand, within CA265_RS23335 at 5711.776 kb on - strand, within CA265_RS23335 at 5711.820 kb on - strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.877 kb on + strand, within CA265_RS23335 at 5711.878 kb on - strand, within CA265_RS23335 at 5711.899 kb on - strand, within CA265_RS23335 at 5711.935 kb on - strand, within CA265_RS23335 at 5711.935 kb on - strand, within CA265_RS23335 at 5711.946 kb on - strand at 5712.010 kb on - strand at 5712.010 kb on - strand at 5712.013 kb on - strand at 5712.098 kb on + strand at 5712.099 kb on - strand at 5712.136 kb on - strand at 5712.150 kb on - strand at 5712.156 kb on - strand at 5712.156 kb on - strand at 5712.160 kb on - strand at 5712.175 kb on - strand at 5712.197 kb on + strand at 5712.197 kb on + strand at 5712.203 kb on + strand at 5712.276 kb on - strand at 5712.277 kb on + strand at 5712.282 kb on - strand at 5712.282 kb on - strand at 5712.297 kb on - strand at 5712.409 kb on - strand at 5712.582 kb on + strand at 5712.582 kb on + strand at 5712.583 kb on - strand at 5712.612 kb on - strand, within CA265_RS23340 at 5712.612 kb on - strand, within CA265_RS23340 at 5712.629 kb on + strand, within CA265_RS23340 at 5712.646 kb on + strand, within CA265_RS23340 at 5712.676 kb on - strand, within CA265_RS23340 at 5712.696 kb on + strand, within CA265_RS23340 at 5712.696 kb on + strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.715 kb on - strand, within CA265_RS23340 at 5712.741 kb on + strand, within CA265_RS23340 at 5712.757 kb on + strand, within CA265_RS23340 at 5712.808 kb on + strand, within CA265_RS23340 at 5712.809 kb on - strand, within CA265_RS23340 at 5712.815 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.836 kb on - strand, within CA265_RS23340 at 5712.866 kb on + strand, within CA265_RS23340 at 5712.900 kb on + strand, within CA265_RS23340 at 5712.913 kb on - strand, within CA265_RS23340 at 5712.913 kb on - strand, within CA265_RS23340 at 5713.045 kb on - strand, within CA265_RS23340 at 5713.111 kb on - strand, within CA265_RS23340 at 5713.115 kb on - strand, within CA265_RS23340 at 5713.127 kb on + strand, within CA265_RS23340 at 5713.179 kb on + strand, within CA265_RS23340 at 5713.179 kb on + strand, within CA265_RS23340 at 5713.213 kb on + strand, within CA265_RS23340 at 5713.222 kb on + strand, within CA265_RS23340 at 5713.262 kb on - strand, within CA265_RS23340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,708,092 - CA265_RS23330 0.75 -0.0 5,708,092 - CA265_RS23330 0.75 -0.2 5,708,124 + CA265_RS23330 0.76 -0.1 5,708,199 - CA265_RS23330 0.78 -0.4 5,708,212 + CA265_RS23330 0.79 +0.0 5,708,213 - CA265_RS23330 0.79 +1.3 5,708,218 - CA265_RS23330 0.79 -0.4 5,708,250 + CA265_RS23330 0.80 -0.5 5,708,299 + CA265_RS23330 0.81 -0.2 5,708,299 + CA265_RS23330 0.81 -0.4 5,708,331 + CA265_RS23330 0.82 -0.3 5,708,403 + CA265_RS23330 0.84 -0.8 5,708,403 + CA265_RS23330 0.84 -1.7 5,708,403 + CA265_RS23330 0.84 +0.3 5,708,404 - CA265_RS23330 0.84 -0.2 5,708,404 - CA265_RS23330 0.84 +0.5 5,708,436 - CA265_RS23330 0.85 +0.5 5,708,463 - CA265_RS23330 0.86 +1.6 5,708,476 - CA265_RS23330 0.87 +0.6 5,708,490 + CA265_RS23330 0.87 -0.6 5,708,491 - CA265_RS23330 0.87 +0.3 5,708,491 - CA265_RS23330 0.87 -1.5 5,708,517 - CA265_RS23330 0.88 -0.5 5,708,560 + CA265_RS23330 0.89 -0.4 5,708,562 + CA265_RS23330 0.89 -0.6 5,708,563 - CA265_RS23330 0.89 +1.3 5,708,567 + CA265_RS23330 0.89 -0.8 5,708,629 + +0.5 5,708,630 - +0.2 5,708,662 - +0.2 5,708,684 - -0.3 5,708,784 - +0.0 5,708,784 - -0.1 5,708,803 + -0.4 5,708,804 - +0.6 5,708,839 + -1.6 5,708,840 - +0.0 5,708,840 - +0.3 5,708,840 - +0.1 5,708,925 - -0.1 5,708,925 - +0.9 5,708,929 - -0.2 5,708,932 - +0.6 5,708,977 - -0.6 5,708,977 - -0.6 5,709,031 + -0.9 5,709,084 - +0.2 5,709,087 + -1.0 5,709,091 - -0.1 5,709,102 + -0.4 5,709,148 - +0.1 5,709,152 + +0.4 5,709,152 + -0.8 5,709,153 - -0.7 5,709,153 - -0.5 5,709,204 - -2.0 5,709,241 - -0.7 5,709,267 + -0.3 5,709,268 - +2.0 5,709,280 - -0.7 5,709,280 - +0.3 5,709,280 - +0.5 5,709,386 + CA265_RS23335 0.11 -0.4 5,709,389 - CA265_RS23335 0.11 -1.5 5,709,389 - CA265_RS23335 0.11 +2.0 5,709,417 - CA265_RS23335 0.12 +0.2 5,709,427 + CA265_RS23335 0.12 -1.5 5,709,427 + CA265_RS23335 0.12 +0.1 5,709,427 + CA265_RS23335 0.12 +0.5 5,709,470 + CA265_RS23335 0.14 -1.2 5,709,471 - CA265_RS23335 0.14 +0.5 5,709,474 + CA265_RS23335 0.14 -0.9 5,709,475 - CA265_RS23335 0.14 -1.6 5,709,510 + CA265_RS23335 0.15 -0.5 5,709,511 - CA265_RS23335 0.15 +0.3 5,709,659 + CA265_RS23335 0.20 +0.2 5,709,659 + CA265_RS23335 0.20 -0.4 5,709,714 + CA265_RS23335 0.21 -0.0 5,709,743 + CA265_RS23335 0.22 +1.4 5,709,744 - CA265_RS23335 0.22 +0.9 5,709,799 - CA265_RS23335 0.24 +1.1 5,709,826 - CA265_RS23335 0.25 +0.3 5,709,854 + CA265_RS23335 0.26 -0.3 5,709,929 + CA265_RS23335 0.28 -0.4 5,709,974 - CA265_RS23335 0.29 +0.6 5,710,147 - CA265_RS23335 0.35 +0.1 5,710,150 + CA265_RS23335 0.35 -0.2 5,710,151 - CA265_RS23335 0.35 +1.5 5,710,293 + CA265_RS23335 0.39 +0.4 5,710,294 - CA265_RS23335 0.39 -0.0 5,710,298 + CA265_RS23335 0.39 +1.2 5,710,302 + CA265_RS23335 0.39 +0.4 5,710,303 - CA265_RS23335 0.40 +0.2 5,710,303 - CA265_RS23335 0.40 -0.5 5,710,421 + CA265_RS23335 0.43 +0.1 5,710,423 + CA265_RS23335 0.43 +1.7 5,710,423 + CA265_RS23335 0.43 -0.1 5,710,424 - CA265_RS23335 0.43 -0.4 5,710,424 - CA265_RS23335 0.43 +0.3 5,710,465 + CA265_RS23335 0.44 -0.3 5,710,466 - CA265_RS23335 0.45 -1.5 5,710,466 - CA265_RS23335 0.45 +0.3 5,710,521 + CA265_RS23335 0.46 +0.6 5,710,563 + CA265_RS23335 0.48 -2.3 5,710,563 + CA265_RS23335 0.48 -0.9 5,710,564 - CA265_RS23335 0.48 +0.8 5,710,630 + CA265_RS23335 0.50 -0.2 5,710,749 - CA265_RS23335 0.53 -0.4 5,710,750 + CA265_RS23335 0.53 -0.1 5,710,753 - CA265_RS23335 0.53 +0.8 5,710,823 - CA265_RS23335 0.56 +0.8 5,710,856 + CA265_RS23335 0.57 -2.8 5,711,065 - CA265_RS23335 0.63 -0.3 5,711,065 - CA265_RS23335 0.63 +1.0 5,711,065 - CA265_RS23335 0.63 +0.5 5,711,065 - CA265_RS23335 0.63 +1.1 5,711,168 - CA265_RS23335 0.66 +0.6 5,711,169 + CA265_RS23335 0.66 +0.2 5,711,170 - CA265_RS23335 0.66 -0.1 5,711,222 - CA265_RS23335 0.68 -0.4 5,711,266 + CA265_RS23335 0.69 -0.1 5,711,266 + CA265_RS23335 0.69 +0.1 5,711,266 + CA265_RS23335 0.69 -0.1 5,711,266 + CA265_RS23335 0.69 -0.6 5,711,267 - CA265_RS23335 0.69 -0.5 5,711,267 - CA265_RS23335 0.69 +0.3 5,711,286 + CA265_RS23335 0.70 +0.4 5,711,289 + CA265_RS23335 0.70 -0.5 5,711,299 - CA265_RS23335 0.70 +0.8 5,711,299 - CA265_RS23335 0.70 -0.1 5,711,311 - CA265_RS23335 0.71 +0.1 5,711,311 - CA265_RS23335 0.71 +0.7 5,711,364 + CA265_RS23335 0.72 -0.7 5,711,445 + CA265_RS23335 0.75 +0.8 5,711,446 - CA265_RS23335 0.75 -0.2 5,711,506 + CA265_RS23335 0.77 -0.4 5,711,508 + CA265_RS23335 0.77 -0.7 5,711,531 - CA265_RS23335 0.77 -0.6 5,711,540 + CA265_RS23335 0.78 -1.6 5,711,574 - CA265_RS23335 0.79 +0.1 5,711,574 - CA265_RS23335 0.79 -2.5 5,711,634 - CA265_RS23335 0.81 +0.1 5,711,644 - CA265_RS23335 0.81 +0.2 5,711,709 + CA265_RS23335 0.83 -0.3 5,711,710 - CA265_RS23335 0.83 +0.2 5,711,710 - CA265_RS23335 0.83 -1.0 5,711,724 + CA265_RS23335 0.83 +1.0 5,711,724 + CA265_RS23335 0.83 -0.4 5,711,776 - CA265_RS23335 0.85 +0.6 5,711,776 - CA265_RS23335 0.85 -1.0 5,711,820 - CA265_RS23335 0.86 +0.4 5,711,877 + CA265_RS23335 0.88 -0.3 5,711,877 + CA265_RS23335 0.88 -2.0 5,711,877 + CA265_RS23335 0.88 +0.4 5,711,878 - CA265_RS23335 0.88 +2.0 5,711,899 - CA265_RS23335 0.89 +0.3 5,711,935 - CA265_RS23335 0.90 +0.2 5,711,935 - CA265_RS23335 0.90 +1.0 5,711,946 - +0.5 5,712,010 - -1.1 5,712,010 - -0.6 5,712,013 - +0.6 5,712,098 + +0.6 5,712,099 - -1.2 5,712,136 - -0.0 5,712,150 - +0.3 5,712,156 - -0.4 5,712,156 - +0.3 5,712,160 - -0.8 5,712,175 - -0.6 5,712,197 + +2.8 5,712,197 + -0.7 5,712,203 + +0.2 5,712,276 - -0.6 5,712,277 + -0.6 5,712,282 - +0.8 5,712,282 - +0.4 5,712,297 - -1.3 5,712,409 - -0.6 5,712,582 + -1.2 5,712,582 + -0.8 5,712,583 - +0.2 5,712,612 - CA265_RS23340 0.11 -1.0 5,712,612 - CA265_RS23340 0.11 -0.1 5,712,629 + CA265_RS23340 0.11 +0.8 5,712,646 + CA265_RS23340 0.12 +0.0 5,712,676 - CA265_RS23340 0.13 +2.0 5,712,696 + CA265_RS23340 0.14 +1.5 5,712,696 + CA265_RS23340 0.14 +0.6 5,712,715 - CA265_RS23340 0.14 +0.3 5,712,715 - CA265_RS23340 0.14 +0.1 5,712,715 - CA265_RS23340 0.14 -1.7 5,712,741 + CA265_RS23340 0.15 +0.6 5,712,757 + CA265_RS23340 0.16 -0.9 5,712,808 + CA265_RS23340 0.18 +0.6 5,712,809 - CA265_RS23340 0.18 -0.0 5,712,815 - CA265_RS23340 0.18 +1.0 5,712,836 - CA265_RS23340 0.19 +0.5 5,712,836 - CA265_RS23340 0.19 +0.4 5,712,836 - CA265_RS23340 0.19 -0.2 5,712,866 + CA265_RS23340 0.20 +1.3 5,712,900 + CA265_RS23340 0.21 +0.3 5,712,913 - CA265_RS23340 0.22 -0.8 5,712,913 - CA265_RS23340 0.22 +0.2 5,713,045 - CA265_RS23340 0.26 -0.2 5,713,111 - CA265_RS23340 0.29 -0.7 5,713,115 - CA265_RS23340 0.29 -0.9 5,713,127 + CA265_RS23340 0.29 +0.4 5,713,179 + CA265_RS23340 0.31 +0.6 5,713,179 + CA265_RS23340 0.31 +1.2 5,713,213 + CA265_RS23340 0.32 +2.7 5,713,222 + CA265_RS23340 0.33 +0.8 5,713,262 - CA265_RS23340 0.34 -0.6
Or see this region's nucleotide sequence