Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21780 and CA265_RS21785 are separated by 111 nucleotides CA265_RS21785 and CA265_RS21790 are separated by 109 nucleotides CA265_RS21790 and CA265_RS21795 overlap by 20 nucleotides
CA265_RS21780: CA265_RS21780 - aminopeptidase, at 5,351,447 to 5,352,640
_RS21780
CA265_RS21785: CA265_RS21785 - L-serine ammonia-lyase, at 5,352,752 to 5,354,179
_RS21785
CA265_RS21790: CA265_RS21790 - hypothetical protein, at 5,354,289 to 5,354,780
_RS21790
CA265_RS21795: CA265_RS21795 - magnesium transporter MgtC, at 5,354,761 to 5,355,420
_RS21795
Position (kb) 5352
5353
5354
5355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5351.839 kb on + strand, within CA265_RS21780 at 5351.840 kb on - strand, within CA265_RS21780 at 5351.841 kb on + strand, within CA265_RS21780 at 5351.852 kb on + strand, within CA265_RS21780 at 5351.896 kb on + strand, within CA265_RS21780 at 5351.898 kb on + strand, within CA265_RS21780 at 5351.899 kb on - strand, within CA265_RS21780 at 5351.899 kb on - strand, within CA265_RS21780 at 5351.949 kb on + strand, within CA265_RS21780 at 5351.981 kb on + strand, within CA265_RS21780 at 5351.986 kb on - strand, within CA265_RS21780 at 5352.051 kb on + strand, within CA265_RS21780 at 5352.051 kb on + strand, within CA265_RS21780 at 5352.052 kb on - strand, within CA265_RS21780 at 5352.052 kb on - strand, within CA265_RS21780 at 5352.081 kb on + strand, within CA265_RS21780 at 5352.146 kb on + strand, within CA265_RS21780 at 5352.228 kb on + strand, within CA265_RS21780 at 5352.272 kb on + strand, within CA265_RS21780 at 5352.319 kb on + strand, within CA265_RS21780 at 5352.320 kb on - strand, within CA265_RS21780 at 5352.348 kb on + strand, within CA265_RS21780 at 5352.434 kb on - strand, within CA265_RS21780 at 5352.481 kb on + strand, within CA265_RS21780 at 5352.577 kb on - strand at 5352.590 kb on - strand at 5352.711 kb on + strand at 5352.854 kb on + strand at 5352.866 kb on + strand at 5352.867 kb on - strand at 5352.872 kb on + strand at 5352.873 kb on - strand at 5352.955 kb on + strand, within CA265_RS21785 at 5353.035 kb on - strand, within CA265_RS21785 at 5353.127 kb on - strand, within CA265_RS21785 at 5353.167 kb on - strand, within CA265_RS21785 at 5353.167 kb on - strand, within CA265_RS21785 at 5353.241 kb on + strand, within CA265_RS21785 at 5353.244 kb on + strand, within CA265_RS21785 at 5353.244 kb on + strand, within CA265_RS21785 at 5353.256 kb on + strand, within CA265_RS21785 at 5353.349 kb on + strand, within CA265_RS21785 at 5353.349 kb on + strand, within CA265_RS21785 at 5353.354 kb on + strand, within CA265_RS21785 at 5353.355 kb on - strand, within CA265_RS21785 at 5353.360 kb on + strand, within CA265_RS21785 at 5353.400 kb on - strand, within CA265_RS21785 at 5353.400 kb on - strand, within CA265_RS21785 at 5353.411 kb on - strand, within CA265_RS21785 at 5353.430 kb on + strand, within CA265_RS21785 at 5353.430 kb on + strand, within CA265_RS21785 at 5353.431 kb on - strand, within CA265_RS21785 at 5353.514 kb on - strand, within CA265_RS21785 at 5353.541 kb on + strand, within CA265_RS21785 at 5353.541 kb on + strand, within CA265_RS21785 at 5353.542 kb on - strand, within CA265_RS21785 at 5353.621 kb on + strand, within CA265_RS21785 at 5353.622 kb on - strand, within CA265_RS21785 at 5353.638 kb on - strand, within CA265_RS21785 at 5353.733 kb on - strand, within CA265_RS21785 at 5353.737 kb on + strand, within CA265_RS21785 at 5353.740 kb on + strand, within CA265_RS21785 at 5353.741 kb on - strand, within CA265_RS21785 at 5353.862 kb on + strand, within CA265_RS21785 at 5353.967 kb on + strand, within CA265_RS21785 at 5354.114 kb on - strand at 5354.133 kb on - strand at 5354.188 kb on + strand at 5354.188 kb on + strand at 5354.189 kb on - strand at 5354.189 kb on - strand at 5354.203 kb on - strand at 5354.262 kb on + strand at 5354.268 kb on + strand at 5354.287 kb on + strand at 5354.343 kb on - strand, within CA265_RS21790 at 5354.343 kb on - strand, within CA265_RS21790 at 5354.364 kb on + strand, within CA265_RS21790 at 5354.365 kb on - strand, within CA265_RS21790 at 5354.365 kb on - strand, within CA265_RS21790 at 5354.388 kb on + strand, within CA265_RS21790 at 5354.388 kb on + strand, within CA265_RS21790 at 5354.388 kb on + strand, within CA265_RS21790 at 5354.388 kb on + strand, within CA265_RS21790 at 5354.427 kb on - strand, within CA265_RS21790 at 5354.507 kb on + strand, within CA265_RS21790 at 5354.507 kb on + strand, within CA265_RS21790 at 5354.508 kb on - strand, within CA265_RS21790 at 5354.569 kb on + strand, within CA265_RS21790 at 5354.619 kb on - strand, within CA265_RS21790 at 5354.619 kb on - strand, within CA265_RS21790 at 5354.620 kb on + strand, within CA265_RS21790 at 5354.620 kb on + strand, within CA265_RS21790 at 5354.621 kb on - strand, within CA265_RS21790 at 5354.621 kb on - strand, within CA265_RS21790 at 5354.728 kb on + strand, within CA265_RS21790 at 5354.728 kb on + strand, within CA265_RS21790 at 5354.762 kb on + strand at 5354.779 kb on - strand at 5354.781 kb on + strand at 5354.838 kb on + strand, within CA265_RS21795 at 5354.863 kb on - strand, within CA265_RS21795 at 5354.863 kb on - strand, within CA265_RS21795 at 5354.863 kb on - strand, within CA265_RS21795 at 5354.927 kb on + strand, within CA265_RS21795 at 5354.949 kb on + strand, within CA265_RS21795 at 5354.949 kb on + strand, within CA265_RS21795 at 5354.950 kb on - strand, within CA265_RS21795 at 5354.950 kb on - strand, within CA265_RS21795 at 5355.059 kb on - strand, within CA265_RS21795 at 5355.085 kb on + strand, within CA265_RS21795 at 5355.133 kb on - strand, within CA265_RS21795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,351,839 + CA265_RS21780 0.33 -1.1 5,351,840 - CA265_RS21780 0.33 -0.8 5,351,841 + CA265_RS21780 0.33 -1.1 5,351,852 + CA265_RS21780 0.34 -1.2 5,351,896 + CA265_RS21780 0.38 +0.6 5,351,898 + CA265_RS21780 0.38 -0.8 5,351,899 - CA265_RS21780 0.38 -1.3 5,351,899 - CA265_RS21780 0.38 -0.7 5,351,949 + CA265_RS21780 0.42 -2.1 5,351,981 + CA265_RS21780 0.45 -0.1 5,351,986 - CA265_RS21780 0.45 -0.5 5,352,051 + CA265_RS21780 0.51 -0.2 5,352,051 + CA265_RS21780 0.51 -1.2 5,352,052 - CA265_RS21780 0.51 -0.4 5,352,052 - CA265_RS21780 0.51 -0.9 5,352,081 + CA265_RS21780 0.53 -0.2 5,352,146 + CA265_RS21780 0.59 -0.3 5,352,228 + CA265_RS21780 0.65 -1.0 5,352,272 + CA265_RS21780 0.69 -0.3 5,352,319 + CA265_RS21780 0.73 -0.3 5,352,320 - CA265_RS21780 0.73 -0.0 5,352,348 + CA265_RS21780 0.75 +1.0 5,352,434 - CA265_RS21780 0.83 -0.2 5,352,481 + CA265_RS21780 0.87 +0.8 5,352,577 - -1.3 5,352,590 - -1.5 5,352,711 + -2.5 5,352,854 + +0.5 5,352,866 + -0.3 5,352,867 - +0.5 5,352,872 + +0.1 5,352,873 - +0.6 5,352,955 + CA265_RS21785 0.14 -3.0 5,353,035 - CA265_RS21785 0.20 -0.3 5,353,127 - CA265_RS21785 0.26 +1.0 5,353,167 - CA265_RS21785 0.29 -0.7 5,353,167 - CA265_RS21785 0.29 +0.4 5,353,241 + CA265_RS21785 0.34 +1.0 5,353,244 + CA265_RS21785 0.34 +0.0 5,353,244 + CA265_RS21785 0.34 -0.2 5,353,256 + CA265_RS21785 0.35 +0.0 5,353,349 + CA265_RS21785 0.42 +0.3 5,353,349 + CA265_RS21785 0.42 -0.9 5,353,354 + CA265_RS21785 0.42 +0.6 5,353,355 - CA265_RS21785 0.42 +0.8 5,353,360 + CA265_RS21785 0.43 -0.6 5,353,400 - CA265_RS21785 0.45 -0.2 5,353,400 - CA265_RS21785 0.45 -0.8 5,353,411 - CA265_RS21785 0.46 +0.2 5,353,430 + CA265_RS21785 0.47 +0.1 5,353,430 + CA265_RS21785 0.47 -1.7 5,353,431 - CA265_RS21785 0.48 +1.2 5,353,514 - CA265_RS21785 0.53 +0.6 5,353,541 + CA265_RS21785 0.55 -2.2 5,353,541 + CA265_RS21785 0.55 +0.3 5,353,542 - CA265_RS21785 0.55 +0.2 5,353,621 + CA265_RS21785 0.61 +0.0 5,353,622 - CA265_RS21785 0.61 -0.0 5,353,638 - CA265_RS21785 0.62 +0.2 5,353,733 - CA265_RS21785 0.69 +0.5 5,353,737 + CA265_RS21785 0.69 +0.2 5,353,740 + CA265_RS21785 0.69 +0.8 5,353,741 - CA265_RS21785 0.69 +1.0 5,353,862 + CA265_RS21785 0.78 +0.6 5,353,967 + CA265_RS21785 0.85 -1.1 5,354,114 - +0.6 5,354,133 - +1.7 5,354,188 + -0.0 5,354,188 + -1.2 5,354,189 - -0.1 5,354,189 - +0.2 5,354,203 - -0.3 5,354,262 + +0.2 5,354,268 + +0.0 5,354,287 + +0.2 5,354,343 - CA265_RS21790 0.11 +0.2 5,354,343 - CA265_RS21790 0.11 -1.6 5,354,364 + CA265_RS21790 0.15 +0.6 5,354,365 - CA265_RS21790 0.15 +1.3 5,354,365 - CA265_RS21790 0.15 +0.5 5,354,388 + CA265_RS21790 0.20 +0.3 5,354,388 + CA265_RS21790 0.20 +0.4 5,354,388 + CA265_RS21790 0.20 +0.2 5,354,388 + CA265_RS21790 0.20 -0.1 5,354,427 - CA265_RS21790 0.28 +0.8 5,354,507 + CA265_RS21790 0.44 -1.9 5,354,507 + CA265_RS21790 0.44 -0.0 5,354,508 - CA265_RS21790 0.45 +0.4 5,354,569 + CA265_RS21790 0.57 -1.0 5,354,619 - CA265_RS21790 0.67 -0.4 5,354,619 - CA265_RS21790 0.67 -0.3 5,354,620 + CA265_RS21790 0.67 -0.4 5,354,620 + CA265_RS21790 0.67 +0.3 5,354,621 - CA265_RS21790 0.67 -2.5 5,354,621 - CA265_RS21790 0.67 +2.0 5,354,728 + CA265_RS21790 0.89 +0.4 5,354,728 + CA265_RS21790 0.89 +0.2 5,354,762 + +0.9 5,354,779 - +0.6 5,354,781 + +3.0 5,354,838 + CA265_RS21795 0.12 +0.3 5,354,863 - CA265_RS21795 0.15 +1.3 5,354,863 - CA265_RS21795 0.15 +0.9 5,354,863 - CA265_RS21795 0.15 +1.0 5,354,927 + CA265_RS21795 0.25 -0.4 5,354,949 + CA265_RS21795 0.28 +1.0 5,354,949 + CA265_RS21795 0.28 -0.3 5,354,950 - CA265_RS21795 0.29 -0.3 5,354,950 - CA265_RS21795 0.29 +0.8 5,355,059 - CA265_RS21795 0.45 -0.8 5,355,085 + CA265_RS21795 0.49 +0.2 5,355,133 - CA265_RS21795 0.56 +0.2
Or see this region's nucleotide sequence