Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21615 and CA265_RS21620 are separated by 104 nucleotides CA265_RS21620 and CA265_RS21625 are separated by 18 nucleotides
CA265_RS21615: CA265_RS21615 - metalloprotease, at 5,318,289 to 5,319,131
_RS21615
CA265_RS21620: CA265_RS21620 - hybrid sensor histidine kinase/response regulator, at 5,319,236 to 5,320,369
_RS21620
CA265_RS21625: CA265_RS21625 - histidine kinase, at 5,320,388 to 5,323,972
_RS21625
Position (kb) 5319
5320
5321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5318.239 kb on + strand at 5318.257 kb on + strand at 5318.257 kb on + strand at 5318.270 kb on + strand at 5318.288 kb on + strand at 5318.289 kb on - strand at 5318.371 kb on + strand at 5318.372 kb on - strand at 5318.377 kb on + strand, within CA265_RS21615 at 5318.380 kb on + strand, within CA265_RS21615 at 5318.381 kb on - strand, within CA265_RS21615 at 5318.389 kb on + strand, within CA265_RS21615 at 5318.571 kb on + strand, within CA265_RS21615 at 5318.572 kb on - strand, within CA265_RS21615 at 5318.572 kb on - strand, within CA265_RS21615 at 5318.669 kb on + strand, within CA265_RS21615 at 5318.694 kb on + strand, within CA265_RS21615 at 5318.749 kb on + strand, within CA265_RS21615 at 5318.904 kb on - strand, within CA265_RS21615 at 5318.904 kb on - strand, within CA265_RS21615 at 5318.959 kb on + strand, within CA265_RS21615 at 5319.060 kb on + strand at 5319.061 kb on - strand at 5319.093 kb on - strand at 5319.095 kb on + strand at 5319.114 kb on - strand at 5319.202 kb on + strand at 5319.231 kb on + strand at 5319.245 kb on - strand at 5319.289 kb on - strand at 5319.289 kb on - strand at 5319.440 kb on - strand, within CA265_RS21620 at 5319.464 kb on - strand, within CA265_RS21620 at 5319.465 kb on + strand, within CA265_RS21620 at 5319.485 kb on - strand, within CA265_RS21620 at 5319.485 kb on - strand, within CA265_RS21620 at 5319.742 kb on + strand, within CA265_RS21620 at 5319.743 kb on - strand, within CA265_RS21620 at 5319.841 kb on - strand, within CA265_RS21620 at 5319.841 kb on - strand, within CA265_RS21620 at 5320.061 kb on - strand, within CA265_RS21620 at 5320.075 kb on + strand, within CA265_RS21620 at 5320.106 kb on - strand, within CA265_RS21620 at 5320.242 kb on - strand, within CA265_RS21620 at 5320.242 kb on - strand, within CA265_RS21620 at 5320.243 kb on + strand, within CA265_RS21620 at 5320.244 kb on - strand, within CA265_RS21620 at 5320.377 kb on + strand at 5320.446 kb on + strand at 5320.469 kb on + strand at 5320.470 kb on - strand at 5320.472 kb on - strand at 5320.493 kb on - strand at 5320.493 kb on - strand at 5320.549 kb on + strand at 5320.550 kb on - strand at 5320.550 kb on - strand at 5320.550 kb on - strand at 5320.551 kb on + strand at 5320.551 kb on + strand at 5320.560 kb on + strand at 5320.626 kb on - strand at 5320.656 kb on + strand at 5320.679 kb on - strand at 5320.687 kb on + strand at 5320.710 kb on + strand at 5320.823 kb on + strand, within CA265_RS21625 at 5320.853 kb on - strand, within CA265_RS21625 at 5320.920 kb on - strand, within CA265_RS21625 at 5320.966 kb on + strand, within CA265_RS21625 at 5320.989 kb on + strand, within CA265_RS21625 at 5320.989 kb on + strand, within CA265_RS21625 at 5321.046 kb on - strand, within CA265_RS21625 at 5321.063 kb on - strand, within CA265_RS21625 at 5321.063 kb on - strand, within CA265_RS21625 at 5321.108 kb on + strand, within CA265_RS21625 at 5321.247 kb on + strand, within CA265_RS21625 at 5321.296 kb on + strand, within CA265_RS21625 at 5321.296 kb on + strand, within CA265_RS21625 at 5321.301 kb on + strand, within CA265_RS21625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,318,239 + -0.2 5,318,257 + -0.3 5,318,257 + +0.6 5,318,270 + -0.0 5,318,288 + -0.3 5,318,289 - +0.0 5,318,371 + -0.9 5,318,372 - -2.4 5,318,377 + CA265_RS21615 0.10 +0.7 5,318,380 + CA265_RS21615 0.11 +0.4 5,318,381 - CA265_RS21615 0.11 +0.3 5,318,389 + CA265_RS21615 0.12 -0.3 5,318,571 + CA265_RS21615 0.33 -0.5 5,318,572 - CA265_RS21615 0.34 +0.2 5,318,572 - CA265_RS21615 0.34 -0.1 5,318,669 + CA265_RS21615 0.45 -0.1 5,318,694 + CA265_RS21615 0.48 +0.5 5,318,749 + CA265_RS21615 0.55 +0.7 5,318,904 - CA265_RS21615 0.73 +0.1 5,318,904 - CA265_RS21615 0.73 -0.4 5,318,959 + CA265_RS21615 0.79 -1.9 5,319,060 + -0.3 5,319,061 - +0.8 5,319,093 - +0.5 5,319,095 + +0.7 5,319,114 - -0.0 5,319,202 + +0.5 5,319,231 + +1.2 5,319,245 - +0.7 5,319,289 - +0.6 5,319,289 - +0.6 5,319,440 - CA265_RS21620 0.18 +0.4 5,319,464 - CA265_RS21620 0.20 +0.7 5,319,465 + CA265_RS21620 0.20 +1.2 5,319,485 - CA265_RS21620 0.22 +0.2 5,319,485 - CA265_RS21620 0.22 +0.9 5,319,742 + CA265_RS21620 0.45 -0.4 5,319,743 - CA265_RS21620 0.45 +0.9 5,319,841 - CA265_RS21620 0.53 +1.2 5,319,841 - CA265_RS21620 0.53 -0.8 5,320,061 - CA265_RS21620 0.73 +0.7 5,320,075 + CA265_RS21620 0.74 +0.9 5,320,106 - CA265_RS21620 0.77 -0.0 5,320,242 - CA265_RS21620 0.89 -0.1 5,320,242 - CA265_RS21620 0.89 +0.1 5,320,243 + CA265_RS21620 0.89 +2.0 5,320,244 - CA265_RS21620 0.89 +0.2 5,320,377 + -1.3 5,320,446 + -1.2 5,320,469 + -0.8 5,320,470 - -0.2 5,320,472 - -1.0 5,320,493 - -0.1 5,320,493 - -0.4 5,320,549 + -0.6 5,320,550 - -0.1 5,320,550 - +0.0 5,320,550 - +0.2 5,320,551 + -1.8 5,320,551 + -0.5 5,320,560 + -3.3 5,320,626 - -1.1 5,320,656 + -1.3 5,320,679 - -0.0 5,320,687 + -2.0 5,320,710 + -0.0 5,320,823 + CA265_RS21625 0.12 -1.7 5,320,853 - CA265_RS21625 0.13 -0.1 5,320,920 - CA265_RS21625 0.15 -0.6 5,320,966 + CA265_RS21625 0.16 -2.4 5,320,989 + CA265_RS21625 0.17 -1.6 5,320,989 + CA265_RS21625 0.17 -1.1 5,321,046 - CA265_RS21625 0.18 +0.0 5,321,063 - CA265_RS21625 0.19 +0.2 5,321,063 - CA265_RS21625 0.19 -0.6 5,321,108 + CA265_RS21625 0.20 -1.5 5,321,247 + CA265_RS21625 0.24 +0.2 5,321,296 + CA265_RS21625 0.25 +0.4 5,321,296 + CA265_RS21625 0.25 -0.6 5,321,301 + CA265_RS21625 0.25 -0.9
Or see this region's nucleotide sequence