Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21555 and CA265_RS21560 are separated by 69 nucleotides CA265_RS21560 and CA265_RS21565 are separated by 104 nucleotides CA265_RS21565 and CA265_RS21570 are separated by 197 nucleotides CA265_RS21570 and CA265_RS21575 overlap by 4 nucleotides
CA265_RS21555: CA265_RS21555 - hypothetical protein, at 5,308,726 to 5,309,601
_RS21555
CA265_RS21560: CA265_RS21560 - hypothetical protein, at 5,309,671 to 5,310,597
_RS21560
CA265_RS21565: CA265_RS21565 - cold-shock protein, at 5,310,702 to 5,310,893
_RS21565
CA265_RS21570: CA265_RS21570 - hypothetical protein, at 5,311,091 to 5,311,573
_RS21570
CA265_RS21575: CA265_RS21575 - RNA polymerase subunit sigma, at 5,311,570 to 5,312,151
_RS21575
Position (kb) 5309
5310
5311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5308.772 kb on + strand at 5308.773 kb on - strand at 5308.930 kb on - strand, within CA265_RS21555 at 5308.946 kb on + strand, within CA265_RS21555 at 5309.097 kb on + strand, within CA265_RS21555 at 5309.216 kb on + strand, within CA265_RS21555 at 5309.259 kb on - strand, within CA265_RS21555 at 5309.280 kb on - strand, within CA265_RS21555 at 5309.330 kb on + strand, within CA265_RS21555 at 5309.470 kb on - strand, within CA265_RS21555 at 5309.516 kb on - strand at 5309.561 kb on + strand at 5309.566 kb on - strand at 5309.612 kb on - strand at 5309.627 kb on - strand at 5309.682 kb on + strand at 5309.683 kb on - strand at 5309.781 kb on - strand, within CA265_RS21560 at 5309.893 kb on - strand, within CA265_RS21560 at 5309.893 kb on - strand, within CA265_RS21560 at 5309.893 kb on - strand, within CA265_RS21560 at 5309.940 kb on + strand, within CA265_RS21560 at 5309.941 kb on - strand, within CA265_RS21560 at 5310.066 kb on - strand, within CA265_RS21560 at 5310.078 kb on - strand, within CA265_RS21560 at 5310.104 kb on - strand, within CA265_RS21560 at 5310.186 kb on + strand, within CA265_RS21560 at 5310.186 kb on + strand, within CA265_RS21560 at 5310.189 kb on + strand, within CA265_RS21560 at 5310.190 kb on - strand, within CA265_RS21560 at 5310.243 kb on + strand, within CA265_RS21560 at 5310.363 kb on + strand, within CA265_RS21560 at 5310.364 kb on - strand, within CA265_RS21560 at 5310.376 kb on + strand, within CA265_RS21560 at 5310.413 kb on + strand, within CA265_RS21560 at 5310.413 kb on + strand, within CA265_RS21560 at 5310.413 kb on + strand, within CA265_RS21560 at 5310.414 kb on - strand, within CA265_RS21560 at 5310.414 kb on - strand, within CA265_RS21560 at 5310.420 kb on - strand, within CA265_RS21560 at 5310.430 kb on + strand, within CA265_RS21560 at 5310.450 kb on + strand, within CA265_RS21560 at 5310.599 kb on - strand at 5310.752 kb on + strand, within CA265_RS21565 at 5310.886 kb on + strand at 5310.897 kb on - strand at 5310.897 kb on - strand at 5310.901 kb on - strand at 5310.905 kb on + strand at 5310.954 kb on - strand at 5311.043 kb on + strand at 5311.044 kb on - strand at 5311.045 kb on + strand at 5311.045 kb on + strand at 5311.045 kb on + strand at 5311.181 kb on - strand, within CA265_RS21570 at 5311.256 kb on - strand, within CA265_RS21570 at 5311.257 kb on + strand, within CA265_RS21570 at 5311.319 kb on - strand, within CA265_RS21570 at 5311.372 kb on + strand, within CA265_RS21570 at 5311.576 kb on + strand at 5311.577 kb on - strand at 5311.585 kb on + strand at 5311.597 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,308,772 + -2.0 5,308,773 - -0.7 5,308,930 - CA265_RS21555 0.23 +0.2 5,308,946 + CA265_RS21555 0.25 +0.7 5,309,097 + CA265_RS21555 0.42 -1.0 5,309,216 + CA265_RS21555 0.56 +0.4 5,309,259 - CA265_RS21555 0.61 -0.3 5,309,280 - CA265_RS21555 0.63 +0.2 5,309,330 + CA265_RS21555 0.69 +0.3 5,309,470 - CA265_RS21555 0.85 +0.2 5,309,516 - -0.9 5,309,561 + -0.5 5,309,566 - +0.2 5,309,612 - -0.0 5,309,627 - -0.2 5,309,682 + +0.0 5,309,683 - +0.7 5,309,781 - CA265_RS21560 0.12 +0.0 5,309,893 - CA265_RS21560 0.24 -0.2 5,309,893 - CA265_RS21560 0.24 +0.5 5,309,893 - CA265_RS21560 0.24 +0.3 5,309,940 + CA265_RS21560 0.29 +0.2 5,309,941 - CA265_RS21560 0.29 +0.6 5,310,066 - CA265_RS21560 0.43 -0.5 5,310,078 - CA265_RS21560 0.44 +0.5 5,310,104 - CA265_RS21560 0.47 -0.6 5,310,186 + CA265_RS21560 0.56 -0.3 5,310,186 + CA265_RS21560 0.56 +2.1 5,310,189 + CA265_RS21560 0.56 +0.7 5,310,190 - CA265_RS21560 0.56 +1.7 5,310,243 + CA265_RS21560 0.62 -0.5 5,310,363 + CA265_RS21560 0.75 -1.0 5,310,364 - CA265_RS21560 0.75 +0.9 5,310,376 + CA265_RS21560 0.76 +0.3 5,310,413 + CA265_RS21560 0.80 +0.4 5,310,413 + CA265_RS21560 0.80 -0.4 5,310,413 + CA265_RS21560 0.80 +0.3 5,310,414 - CA265_RS21560 0.80 +1.1 5,310,414 - CA265_RS21560 0.80 +0.7 5,310,420 - CA265_RS21560 0.81 +0.6 5,310,430 + CA265_RS21560 0.82 -0.6 5,310,450 + CA265_RS21560 0.84 +0.5 5,310,599 - +0.6 5,310,752 + CA265_RS21565 0.26 +0.3 5,310,886 + +0.3 5,310,897 - -0.3 5,310,897 - -0.2 5,310,901 - -1.3 5,310,905 + +0.6 5,310,954 - -0.1 5,311,043 + -0.2 5,311,044 - +0.5 5,311,045 + +0.1 5,311,045 + +0.4 5,311,045 + -1.8 5,311,181 - CA265_RS21570 0.19 +0.0 5,311,256 - CA265_RS21570 0.34 -0.2 5,311,257 + CA265_RS21570 0.34 -0.7 5,311,319 - CA265_RS21570 0.47 +1.2 5,311,372 + CA265_RS21570 0.58 -0.0 5,311,576 + +0.8 5,311,577 - -0.3 5,311,585 + -0.2 5,311,597 + +2.0
Or see this region's nucleotide sequence