Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21490 and CA265_RS21495 overlap by 11 nucleotides CA265_RS21495 and CA265_RS21500 are separated by 121 nucleotides
CA265_RS21490: CA265_RS21490 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 5,292,411 to 5,293,823
_RS21490
CA265_RS21495: CA265_RS21495 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 5,293,813 to 5,294,889
_RS21495
CA265_RS21500: CA265_RS21500 - phosphohydrolase, at 5,295,011 to 5,296,111
_RS21500
Position (kb) 5293
5294
5295 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5293.855 kb on - strand at 5293.963 kb on - strand, within CA265_RS21495 at 5293.990 kb on - strand, within CA265_RS21495 at 5293.990 kb on - strand, within CA265_RS21495 at 5294.035 kb on - strand, within CA265_RS21495 at 5294.111 kb on - strand, within CA265_RS21495 at 5294.239 kb on - strand, within CA265_RS21495 at 5294.296 kb on - strand, within CA265_RS21495 at 5294.739 kb on - strand, within CA265_RS21495 at 5294.962 kb on + strand at 5294.962 kb on + strand at 5294.962 kb on + strand at 5294.995 kb on - strand at 5295.039 kb on + strand at 5295.039 kb on + strand at 5295.098 kb on - strand at 5295.101 kb on + strand at 5295.106 kb on + strand at 5295.107 kb on - strand at 5295.208 kb on + strand, within CA265_RS21500 at 5295.289 kb on + strand, within CA265_RS21500 at 5295.291 kb on + strand, within CA265_RS21500 at 5295.316 kb on + strand, within CA265_RS21500 at 5295.320 kb on + strand, within CA265_RS21500 at 5295.320 kb on + strand, within CA265_RS21500 at 5295.320 kb on + strand, within CA265_RS21500 at 5295.372 kb on + strand, within CA265_RS21500 at 5295.397 kb on + strand, within CA265_RS21500 at 5295.443 kb on - strand, within CA265_RS21500 at 5295.462 kb on + strand, within CA265_RS21500 at 5295.467 kb on + strand, within CA265_RS21500 at 5295.506 kb on + strand, within CA265_RS21500 at 5295.527 kb on + strand, within CA265_RS21500 at 5295.566 kb on - strand, within CA265_RS21500 at 5295.573 kb on + strand, within CA265_RS21500 at 5295.574 kb on - strand, within CA265_RS21500 at 5295.574 kb on - strand, within CA265_RS21500 at 5295.585 kb on + strand, within CA265_RS21500 at 5295.619 kb on + strand, within CA265_RS21500 at 5295.667 kb on + strand, within CA265_RS21500 at 5295.698 kb on + strand, within CA265_RS21500 at 5295.737 kb on + strand, within CA265_RS21500 at 5295.751 kb on + strand, within CA265_RS21500 at 5295.752 kb on - strand, within CA265_RS21500 at 5295.761 kb on + strand, within CA265_RS21500 at 5295.761 kb on + strand, within CA265_RS21500 at 5295.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,293,855 - +3.4 5,293,963 - CA265_RS21495 0.14 -0.0 5,293,990 - CA265_RS21495 0.16 -2.5 5,293,990 - CA265_RS21495 0.16 -0.8 5,294,035 - CA265_RS21495 0.21 -1.3 5,294,111 - CA265_RS21495 0.28 -1.2 5,294,239 - CA265_RS21495 0.40 -2.5 5,294,296 - CA265_RS21495 0.45 -2.2 5,294,739 - CA265_RS21495 0.86 -1.9 5,294,962 + -2.7 5,294,962 + -2.6 5,294,962 + -2.4 5,294,995 - +4.3 5,295,039 + -2.3 5,295,039 + -1.3 5,295,098 - +4.5 5,295,101 + -2.0 5,295,106 + -1.4 5,295,107 - +4.7 5,295,208 + CA265_RS21500 0.18 -0.3 5,295,289 + CA265_RS21500 0.25 -1.8 5,295,291 + CA265_RS21500 0.25 -1.4 5,295,316 + CA265_RS21500 0.28 -1.7 5,295,320 + CA265_RS21500 0.28 -1.3 5,295,320 + CA265_RS21500 0.28 -0.5 5,295,320 + CA265_RS21500 0.28 -1.5 5,295,372 + CA265_RS21500 0.33 +0.4 5,295,397 + CA265_RS21500 0.35 -2.8 5,295,443 - CA265_RS21500 0.39 +4.5 5,295,462 + CA265_RS21500 0.41 -2.5 5,295,467 + CA265_RS21500 0.41 -1.3 5,295,506 + CA265_RS21500 0.45 -0.3 5,295,527 + CA265_RS21500 0.47 -0.5 5,295,566 - CA265_RS21500 0.50 +4.1 5,295,573 + CA265_RS21500 0.51 -1.3 5,295,574 - CA265_RS21500 0.51 +4.0 5,295,574 - CA265_RS21500 0.51 +4.0 5,295,585 + CA265_RS21500 0.52 -1.4 5,295,619 + CA265_RS21500 0.55 -0.2 5,295,667 + CA265_RS21500 0.60 -2.3 5,295,698 + CA265_RS21500 0.62 -1.6 5,295,737 + CA265_RS21500 0.66 -1.0 5,295,751 + CA265_RS21500 0.67 -0.7 5,295,752 - CA265_RS21500 0.67 +4.5 5,295,761 + CA265_RS21500 0.68 +0.0 5,295,761 + CA265_RS21500 0.68 +0.3 5,295,858 - +4.5
Or see this region's nucleotide sequence