Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21255 and CA265_RS21260 overlap by 41 nucleotides CA265_RS21260 and CA265_RS21265 are separated by 4 nucleotides
CA265_RS21255: CA265_RS21255 - hypothetical protein, at 5,238,648 to 5,239,829
_RS21255
CA265_RS21260: CA265_RS21260 - hypothetical protein, at 5,239,789 to 5,241,345
_RS21260
CA265_RS21265: CA265_RS21265 - hypothetical protein, at 5,241,350 to 5,242,483
_RS21265
Position (kb) 5239
5240
5241
5242 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 5238.827 kb on + strand, within CA265_RS21255 at 5238.915 kb on - strand, within CA265_RS21255 at 5238.983 kb on + strand, within CA265_RS21255 at 5239.006 kb on + strand, within CA265_RS21255 at 5239.006 kb on + strand, within CA265_RS21255 at 5239.019 kb on + strand, within CA265_RS21255 at 5239.024 kb on + strand, within CA265_RS21255 at 5239.060 kb on - strand, within CA265_RS21255 at 5239.091 kb on + strand, within CA265_RS21255 at 5239.096 kb on - strand, within CA265_RS21255 at 5239.096 kb on - strand, within CA265_RS21255 at 5239.137 kb on - strand, within CA265_RS21255 at 5239.160 kb on + strand, within CA265_RS21255 at 5239.160 kb on + strand, within CA265_RS21255 at 5239.182 kb on - strand, within CA265_RS21255 at 5239.201 kb on + strand, within CA265_RS21255 at 5239.202 kb on - strand, within CA265_RS21255 at 5239.275 kb on + strand, within CA265_RS21255 at 5239.323 kb on + strand, within CA265_RS21255 at 5239.359 kb on + strand, within CA265_RS21255 at 5239.360 kb on - strand, within CA265_RS21255 at 5239.376 kb on + strand, within CA265_RS21255 at 5239.376 kb on + strand, within CA265_RS21255 at 5239.377 kb on - strand, within CA265_RS21255 at 5239.534 kb on + strand, within CA265_RS21255 at 5239.536 kb on + strand, within CA265_RS21255 at 5239.537 kb on - strand, within CA265_RS21255 at 5239.568 kb on + strand, within CA265_RS21255 at 5239.649 kb on - strand, within CA265_RS21255 at 5239.653 kb on + strand, within CA265_RS21255 at 5239.653 kb on + strand, within CA265_RS21255 at 5239.667 kb on + strand, within CA265_RS21255 at 5239.667 kb on + strand, within CA265_RS21255 at 5239.668 kb on - strand, within CA265_RS21255 at 5239.668 kb on - strand, within CA265_RS21255 at 5239.707 kb on + strand, within CA265_RS21255 at 5239.735 kb on + strand at 5239.769 kb on + strand at 5239.793 kb on + strand at 5239.963 kb on - strand, within CA265_RS21260 at 5240.127 kb on - strand, within CA265_RS21260 at 5240.127 kb on - strand, within CA265_RS21260 at 5240.151 kb on + strand, within CA265_RS21260 at 5240.167 kb on + strand, within CA265_RS21260 at 5240.169 kb on + strand, within CA265_RS21260 at 5240.184 kb on + strand, within CA265_RS21260 at 5240.194 kb on + strand, within CA265_RS21260 at 5240.194 kb on + strand, within CA265_RS21260 at 5240.396 kb on + strand, within CA265_RS21260 at 5240.466 kb on + strand, within CA265_RS21260 at 5240.573 kb on - strand, within CA265_RS21260 at 5240.596 kb on - strand, within CA265_RS21260 at 5240.629 kb on + strand, within CA265_RS21260 at 5240.663 kb on + strand, within CA265_RS21260 at 5240.708 kb on + strand, within CA265_RS21260 at 5240.708 kb on + strand, within CA265_RS21260 at 5240.725 kb on - strand, within CA265_RS21260 at 5240.761 kb on + strand, within CA265_RS21260 at 5240.762 kb on - strand, within CA265_RS21260 at 5240.804 kb on + strand, within CA265_RS21260 at 5240.807 kb on + strand, within CA265_RS21260 at 5240.820 kb on + strand, within CA265_RS21260 at 5240.830 kb on + strand, within CA265_RS21260 at 5240.830 kb on + strand, within CA265_RS21260 at 5240.833 kb on - strand, within CA265_RS21260 at 5240.851 kb on - strand, within CA265_RS21260 at 5240.862 kb on + strand, within CA265_RS21260 at 5240.863 kb on - strand, within CA265_RS21260 at 5240.863 kb on - strand, within CA265_RS21260 at 5240.863 kb on - strand, within CA265_RS21260 at 5240.863 kb on - strand, within CA265_RS21260 at 5240.869 kb on - strand, within CA265_RS21260 at 5240.872 kb on + strand, within CA265_RS21260 at 5240.872 kb on + strand, within CA265_RS21260 at 5240.873 kb on - strand, within CA265_RS21260 at 5240.873 kb on - strand, within CA265_RS21260 at 5240.873 kb on - strand, within CA265_RS21260 at 5240.873 kb on - strand, within CA265_RS21260 at 5240.873 kb on - strand, within CA265_RS21260 at 5240.873 kb on - strand, within CA265_RS21260 at 5241.017 kb on - strand, within CA265_RS21260 at 5241.069 kb on + strand, within CA265_RS21260 at 5241.070 kb on - strand, within CA265_RS21260 at 5241.106 kb on + strand, within CA265_RS21260 at 5241.107 kb on - strand, within CA265_RS21260 at 5241.146 kb on + strand, within CA265_RS21260 at 5241.280 kb on - strand at 5241.305 kb on + strand at 5241.350 kb on - strand at 5241.391 kb on + strand at 5241.391 kb on + strand at 5241.393 kb on + strand at 5241.394 kb on - strand at 5241.394 kb on - strand at 5241.477 kb on - strand, within CA265_RS21265 at 5241.592 kb on + strand, within CA265_RS21265 at 5241.593 kb on - strand, within CA265_RS21265 at 5241.655 kb on - strand, within CA265_RS21265 at 5241.672 kb on + strand, within CA265_RS21265 at 5241.673 kb on - strand, within CA265_RS21265 at 5241.675 kb on + strand, within CA265_RS21265 at 5241.676 kb on - strand, within CA265_RS21265 at 5241.692 kb on + strand, within CA265_RS21265 at 5241.782 kb on + strand, within CA265_RS21265 at 5241.782 kb on + strand, within CA265_RS21265 at 5241.809 kb on + strand, within CA265_RS21265 at 5241.814 kb on - strand, within CA265_RS21265 at 5241.839 kb on - strand, within CA265_RS21265 at 5241.851 kb on - strand, within CA265_RS21265 at 5241.863 kb on + strand, within CA265_RS21265 at 5241.865 kb on + strand, within CA265_RS21265 at 5241.871 kb on + strand, within CA265_RS21265 at 5241.871 kb on + strand, within CA265_RS21265 at 5241.872 kb on - strand, within CA265_RS21265 at 5241.872 kb on - strand, within CA265_RS21265 at 5241.872 kb on - strand, within CA265_RS21265 at 5241.872 kb on - strand, within CA265_RS21265 at 5241.965 kb on + strand, within CA265_RS21265 at 5241.966 kb on - strand, within CA265_RS21265 at 5241.966 kb on - strand, within CA265_RS21265 at 5241.987 kb on - strand, within CA265_RS21265 at 5242.020 kb on - strand, within CA265_RS21265 at 5242.132 kb on - strand, within CA265_RS21265 at 5242.132 kb on - strand, within CA265_RS21265 at 5242.153 kb on + strand, within CA265_RS21265 at 5242.229 kb on + strand, within CA265_RS21265 at 5242.229 kb on + strand, within CA265_RS21265 at 5242.230 kb on - strand, within CA265_RS21265 at 5242.230 kb on - strand, within CA265_RS21265 at 5242.230 kb on - strand, within CA265_RS21265 at 5242.249 kb on + strand, within CA265_RS21265
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,238,827 + CA265_RS21255 0.15 +2.7 5,238,915 - CA265_RS21255 0.23 -0.2 5,238,983 + CA265_RS21255 0.28 +4.2 5,239,006 + CA265_RS21255 0.30 +4.1 5,239,006 + CA265_RS21255 0.30 +4.2 5,239,019 + CA265_RS21255 0.31 +3.7 5,239,024 + CA265_RS21255 0.32 +4.2 5,239,060 - CA265_RS21255 0.35 +0.7 5,239,091 + CA265_RS21255 0.37 +3.8 5,239,096 - CA265_RS21255 0.38 -0.1 5,239,096 - CA265_RS21255 0.38 -0.3 5,239,137 - CA265_RS21255 0.41 -0.2 5,239,160 + CA265_RS21255 0.43 +3.0 5,239,160 + CA265_RS21255 0.43 +3.5 5,239,182 - CA265_RS21255 0.45 -0.3 5,239,201 + CA265_RS21255 0.47 +3.9 5,239,202 - CA265_RS21255 0.47 -0.2 5,239,275 + CA265_RS21255 0.53 +3.7 5,239,323 + CA265_RS21255 0.57 +2.0 5,239,359 + CA265_RS21255 0.60 +4.7 5,239,360 - CA265_RS21255 0.60 +0.9 5,239,376 + CA265_RS21255 0.62 +4.2 5,239,376 + CA265_RS21255 0.62 +3.9 5,239,377 - CA265_RS21255 0.62 +1.0 5,239,534 + CA265_RS21255 0.75 +5.0 5,239,536 + CA265_RS21255 0.75 +5.7 5,239,537 - CA265_RS21255 0.75 +0.6 5,239,568 + CA265_RS21255 0.78 +5.6 5,239,649 - CA265_RS21255 0.85 +0.1 5,239,653 + CA265_RS21255 0.85 +5.5 5,239,653 + CA265_RS21255 0.85 +5.5 5,239,667 + CA265_RS21255 0.86 +5.3 5,239,667 + CA265_RS21255 0.86 +5.8 5,239,668 - CA265_RS21255 0.86 +0.0 5,239,668 - CA265_RS21255 0.86 -0.5 5,239,707 + CA265_RS21255 0.90 +5.9 5,239,735 + +5.5 5,239,769 + +5.4 5,239,793 + +5.3 5,239,963 - CA265_RS21260 0.11 +0.2 5,240,127 - CA265_RS21260 0.22 +0.9 5,240,127 - CA265_RS21260 0.22 -0.3 5,240,151 + CA265_RS21260 0.23 +2.9 5,240,167 + CA265_RS21260 0.24 +3.1 5,240,169 + CA265_RS21260 0.24 +4.3 5,240,184 + CA265_RS21260 0.25 +2.2 5,240,194 + CA265_RS21260 0.26 +3.1 5,240,194 + CA265_RS21260 0.26 +3.0 5,240,396 + CA265_RS21260 0.39 +3.6 5,240,466 + CA265_RS21260 0.43 +4.0 5,240,573 - CA265_RS21260 0.50 +0.9 5,240,596 - CA265_RS21260 0.52 +0.5 5,240,629 + CA265_RS21260 0.54 +4.8 5,240,663 + CA265_RS21260 0.56 +4.7 5,240,708 + CA265_RS21260 0.59 +4.2 5,240,708 + CA265_RS21260 0.59 +5.0 5,240,725 - CA265_RS21260 0.60 -0.3 5,240,761 + CA265_RS21260 0.62 +4.9 5,240,762 - CA265_RS21260 0.62 -0.1 5,240,804 + CA265_RS21260 0.65 +4.8 5,240,807 + CA265_RS21260 0.65 +5.7 5,240,820 + CA265_RS21260 0.66 +4.8 5,240,830 + CA265_RS21260 0.67 +5.3 5,240,830 + CA265_RS21260 0.67 +5.1 5,240,833 - CA265_RS21260 0.67 +0.4 5,240,851 - CA265_RS21260 0.68 -0.1 5,240,862 + CA265_RS21260 0.69 +4.7 5,240,863 - CA265_RS21260 0.69 +0.7 5,240,863 - CA265_RS21260 0.69 -0.3 5,240,863 - CA265_RS21260 0.69 +0.5 5,240,863 - CA265_RS21260 0.69 -0.3 5,240,869 - CA265_RS21260 0.69 +0.4 5,240,872 + CA265_RS21260 0.70 +5.3 5,240,872 + CA265_RS21260 0.70 +5.3 5,240,873 - CA265_RS21260 0.70 +0.3 5,240,873 - CA265_RS21260 0.70 -0.3 5,240,873 - CA265_RS21260 0.70 +1.0 5,240,873 - CA265_RS21260 0.70 +0.5 5,240,873 - CA265_RS21260 0.70 -0.3 5,240,873 - CA265_RS21260 0.70 -0.9 5,241,017 - CA265_RS21260 0.79 -0.2 5,241,069 + CA265_RS21260 0.82 +5.4 5,241,070 - CA265_RS21260 0.82 -1.2 5,241,106 + CA265_RS21260 0.85 +5.7 5,241,107 - CA265_RS21260 0.85 +0.7 5,241,146 + CA265_RS21260 0.87 +5.9 5,241,280 - +0.2 5,241,305 + +5.3 5,241,350 - +0.3 5,241,391 + +4.4 5,241,391 + +4.1 5,241,393 + +4.4 5,241,394 - +0.6 5,241,394 - +0.5 5,241,477 - CA265_RS21265 0.11 +0.1 5,241,592 + CA265_RS21265 0.21 +4.4 5,241,593 - CA265_RS21265 0.21 +0.1 5,241,655 - CA265_RS21265 0.27 -0.2 5,241,672 + CA265_RS21265 0.28 +5.1 5,241,673 - CA265_RS21265 0.28 +0.6 5,241,675 + CA265_RS21265 0.29 +5.0 5,241,676 - CA265_RS21265 0.29 -0.0 5,241,692 + CA265_RS21265 0.30 +4.8 5,241,782 + CA265_RS21265 0.38 +5.5 5,241,782 + CA265_RS21265 0.38 +5.8 5,241,809 + CA265_RS21265 0.40 +5.3 5,241,814 - CA265_RS21265 0.41 -0.2 5,241,839 - CA265_RS21265 0.43 +0.9 5,241,851 - CA265_RS21265 0.44 +0.5 5,241,863 + CA265_RS21265 0.45 +3.1 5,241,865 + CA265_RS21265 0.45 +5.6 5,241,871 + CA265_RS21265 0.46 +5.7 5,241,871 + CA265_RS21265 0.46 +5.2 5,241,872 - CA265_RS21265 0.46 +0.0 5,241,872 - CA265_RS21265 0.46 +0.5 5,241,872 - CA265_RS21265 0.46 -0.4 5,241,872 - CA265_RS21265 0.46 -0.2 5,241,965 + CA265_RS21265 0.54 +6.1 5,241,966 - CA265_RS21265 0.54 +1.8 5,241,966 - CA265_RS21265 0.54 -1.7 5,241,987 - CA265_RS21265 0.56 -0.0 5,242,020 - CA265_RS21265 0.59 +0.2 5,242,132 - CA265_RS21265 0.69 +0.2 5,242,132 - CA265_RS21265 0.69 -0.1 5,242,153 + CA265_RS21265 0.71 +6.3 5,242,229 + CA265_RS21265 0.78 +6.2 5,242,229 + CA265_RS21265 0.78 +5.3 5,242,230 - CA265_RS21265 0.78 +1.3 5,242,230 - CA265_RS21265 0.78 +0.7 5,242,230 - CA265_RS21265 0.78 -0.4 5,242,249 + CA265_RS21265 0.79 +6.0
Or see this region's nucleotide sequence