Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20755 and CA265_RS20760 are separated by 9 nucleotides CA265_RS20760 and CA265_RS20765 are separated by 3 nucleotides CA265_RS20765 and CA265_RS20770 are separated by 31 nucleotides CA265_RS20770 and CA265_RS20775 overlap by 4 nucleotides CA265_RS20775 and CA265_RS20780 are separated by 22 nucleotides
CA265_RS20755: CA265_RS20755 - hypothetical protein, at 5,127,069 to 5,128,277
_RS20755
CA265_RS20760: CA265_RS20760 - hypothetical protein, at 5,128,287 to 5,129,108
_RS20760
CA265_RS20765: CA265_RS20765 - mobilization protein, at 5,129,112 to 5,131,145
_RS20765
CA265_RS20770: CA265_RS20770 - hypothetical protein, at 5,131,177 to 5,131,608
_RS20770
CA265_RS20775: CA265_RS20775 - hypothetical protein, at 5,131,605 to 5,132,075
_RS20775
CA265_RS20780: CA265_RS20780 - hypothetical protein, at 5,132,098 to 5,132,877
_RS20780
Position (kb) 5129
5130
5131
5132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5128.213 kb on - strand at 5128.217 kb on + strand at 5128.217 kb on + strand at 5128.324 kb on - strand at 5128.324 kb on - strand at 5128.326 kb on + strand at 5128.422 kb on + strand, within CA265_RS20760 at 5128.430 kb on + strand, within CA265_RS20760 at 5128.617 kb on - strand, within CA265_RS20760 at 5128.617 kb on - strand, within CA265_RS20760 at 5128.617 kb on - strand, within CA265_RS20760 at 5128.624 kb on + strand, within CA265_RS20760 at 5128.647 kb on - strand, within CA265_RS20760 at 5128.903 kb on + strand, within CA265_RS20760 at 5128.903 kb on + strand, within CA265_RS20760 at 5128.938 kb on + strand, within CA265_RS20760 at 5128.974 kb on - strand, within CA265_RS20760 at 5128.974 kb on - strand, within CA265_RS20760 at 5128.978 kb on - strand, within CA265_RS20760 at 5128.999 kb on - strand, within CA265_RS20760 at 5129.062 kb on + strand at 5129.077 kb on - strand at 5129.090 kb on - strand at 5129.090 kb on - strand at 5129.111 kb on + strand at 5129.200 kb on + strand at 5129.200 kb on + strand at 5129.201 kb on - strand at 5129.203 kb on - strand at 5129.259 kb on - strand at 5129.287 kb on - strand at 5129.326 kb on + strand, within CA265_RS20765 at 5129.492 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.496 kb on - strand, within CA265_RS20765 at 5129.496 kb on - strand, within CA265_RS20765 at 5129.496 kb on - strand, within CA265_RS20765 at 5129.527 kb on + strand, within CA265_RS20765 at 5129.553 kb on - strand, within CA265_RS20765 at 5129.711 kb on - strand, within CA265_RS20765 at 5129.865 kb on + strand, within CA265_RS20765 at 5129.865 kb on + strand, within CA265_RS20765 at 5129.865 kb on + strand, within CA265_RS20765 at 5129.867 kb on - strand, within CA265_RS20765 at 5129.956 kb on + strand, within CA265_RS20765 at 5129.977 kb on - strand, within CA265_RS20765 at 5129.978 kb on + strand, within CA265_RS20765 at 5130.180 kb on + strand, within CA265_RS20765 at 5130.180 kb on + strand, within CA265_RS20765 at 5130.181 kb on - strand, within CA265_RS20765 at 5130.213 kb on - strand, within CA265_RS20765 at 5130.369 kb on - strand, within CA265_RS20765 at 5130.404 kb on - strand, within CA265_RS20765 at 5130.474 kb on - strand, within CA265_RS20765 at 5130.474 kb on - strand, within CA265_RS20765 at 5130.474 kb on - strand, within CA265_RS20765 at 5130.835 kb on + strand, within CA265_RS20765 at 5130.836 kb on - strand, within CA265_RS20765 at 5130.837 kb on - strand, within CA265_RS20765 at 5130.869 kb on - strand, within CA265_RS20765 at 5130.869 kb on - strand, within CA265_RS20765 at 5130.976 kb on - strand at 5130.993 kb on + strand at 5131.143 kb on + strand at 5131.194 kb on + strand at 5131.194 kb on + strand at 5131.209 kb on - strand at 5131.209 kb on - strand at 5131.236 kb on - strand, within CA265_RS20770 at 5131.239 kb on + strand, within CA265_RS20770 at 5131.258 kb on - strand, within CA265_RS20770 at 5131.403 kb on + strand, within CA265_RS20770 at 5131.441 kb on - strand, within CA265_RS20770 at 5131.467 kb on + strand, within CA265_RS20770 at 5131.468 kb on - strand, within CA265_RS20770 at 5131.471 kb on + strand, within CA265_RS20770 at 5131.658 kb on + strand, within CA265_RS20775 at 5131.659 kb on - strand, within CA265_RS20775 at 5131.726 kb on + strand, within CA265_RS20775 at 5131.726 kb on + strand, within CA265_RS20775 at 5131.727 kb on - strand, within CA265_RS20775 at 5131.766 kb on - strand, within CA265_RS20775 at 5131.887 kb on + strand, within CA265_RS20775 at 5131.951 kb on + strand, within CA265_RS20775 at 5131.953 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.020 kb on - strand, within CA265_RS20775 at 5132.097 kb on + strand at 5132.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,128,213 - +0.4 5,128,217 + +2.2 5,128,217 + +2.5 5,128,324 - +0.3 5,128,324 - +0.2 5,128,326 + -0.9 5,128,422 + CA265_RS20760 0.16 -0.2 5,128,430 + CA265_RS20760 0.17 +0.3 5,128,617 - CA265_RS20760 0.40 -1.8 5,128,617 - CA265_RS20760 0.40 +0.7 5,128,617 - CA265_RS20760 0.40 -0.7 5,128,624 + CA265_RS20760 0.41 +0.0 5,128,647 - CA265_RS20760 0.44 -0.9 5,128,903 + CA265_RS20760 0.75 +1.1 5,128,903 + CA265_RS20760 0.75 +0.9 5,128,938 + CA265_RS20760 0.79 +0.3 5,128,974 - CA265_RS20760 0.84 +0.9 5,128,974 - CA265_RS20760 0.84 -1.5 5,128,978 - CA265_RS20760 0.84 -0.4 5,128,999 - CA265_RS20760 0.87 +0.5 5,129,062 + +0.8 5,129,077 - -0.3 5,129,090 - -1.5 5,129,090 - -0.3 5,129,111 + +0.5 5,129,200 + +1.1 5,129,200 + +0.2 5,129,201 - -0.1 5,129,203 - -0.6 5,129,259 - -0.4 5,129,287 - -0.7 5,129,326 + CA265_RS20765 0.11 +0.9 5,129,492 + CA265_RS20765 0.19 +1.1 5,129,495 + CA265_RS20765 0.19 +1.3 5,129,495 + CA265_RS20765 0.19 +1.8 5,129,495 + CA265_RS20765 0.19 +1.2 5,129,495 + CA265_RS20765 0.19 +0.4 5,129,495 + CA265_RS20765 0.19 +1.6 5,129,496 - CA265_RS20765 0.19 -0.2 5,129,496 - CA265_RS20765 0.19 +0.5 5,129,496 - CA265_RS20765 0.19 -0.0 5,129,527 + CA265_RS20765 0.20 +2.1 5,129,553 - CA265_RS20765 0.22 +0.4 5,129,711 - CA265_RS20765 0.29 +0.5 5,129,865 + CA265_RS20765 0.37 +0.9 5,129,865 + CA265_RS20765 0.37 +3.2 5,129,865 + CA265_RS20765 0.37 +2.1 5,129,867 - CA265_RS20765 0.37 +0.6 5,129,956 + CA265_RS20765 0.41 +2.7 5,129,977 - CA265_RS20765 0.43 +0.8 5,129,978 + CA265_RS20765 0.43 +1.0 5,130,180 + CA265_RS20765 0.53 +2.2 5,130,180 + CA265_RS20765 0.53 +2.6 5,130,181 - CA265_RS20765 0.53 -0.6 5,130,213 - CA265_RS20765 0.54 +1.2 5,130,369 - CA265_RS20765 0.62 -0.1 5,130,404 - CA265_RS20765 0.64 -0.5 5,130,474 - CA265_RS20765 0.67 +0.2 5,130,474 - CA265_RS20765 0.67 -1.1 5,130,474 - CA265_RS20765 0.67 -1.4 5,130,835 + CA265_RS20765 0.85 +2.5 5,130,836 - CA265_RS20765 0.85 -0.4 5,130,837 - CA265_RS20765 0.85 -0.2 5,130,869 - CA265_RS20765 0.86 +1.0 5,130,869 - CA265_RS20765 0.86 -0.1 5,130,976 - +0.5 5,130,993 + -0.3 5,131,143 + +1.6 5,131,194 + -3.2 5,131,194 + -0.1 5,131,209 - +0.1 5,131,209 - +0.6 5,131,236 - CA265_RS20770 0.14 +0.2 5,131,239 + CA265_RS20770 0.14 -1.5 5,131,258 - CA265_RS20770 0.19 +1.3 5,131,403 + CA265_RS20770 0.52 +1.2 5,131,441 - CA265_RS20770 0.61 -0.5 5,131,467 + CA265_RS20770 0.67 -0.2 5,131,468 - CA265_RS20770 0.67 -0.3 5,131,471 + CA265_RS20770 0.68 -1.8 5,131,658 + CA265_RS20775 0.11 -0.1 5,131,659 - CA265_RS20775 0.11 -0.1 5,131,726 + CA265_RS20775 0.26 -0.4 5,131,726 + CA265_RS20775 0.26 -0.1 5,131,727 - CA265_RS20775 0.26 -0.8 5,131,766 - CA265_RS20775 0.34 -0.3 5,131,887 + CA265_RS20775 0.60 -1.6 5,131,951 + CA265_RS20775 0.73 -1.5 5,131,953 - CA265_RS20775 0.74 -1.4 5,132,020 - CA265_RS20775 0.88 -1.6 5,132,020 - CA265_RS20775 0.88 -0.6 5,132,020 - CA265_RS20775 0.88 +1.2 5,132,020 - CA265_RS20775 0.88 +0.1 5,132,097 + -1.0 5,132,098 - +0.9
Or see this region's nucleotide sequence