Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20320 and CA265_RS20325 are separated by 603 nucleotides CA265_RS20325 and CA265_RS20330 are separated by 211 nucleotides
CA265_RS20320: CA265_RS20320 - hypothetical protein, at 5,022,173 to 5,025,106
_RS20320
CA265_RS20325: CA265_RS20325 - hypothetical protein, at 5,025,710 to 5,026,484
_RS20325
CA265_RS20330: CA265_RS20330 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 5,026,696 to 5,028,171
_RS20330
Position (kb) 5025
5026
5027 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7 at 5024.767 kb on + strand, within CA265_RS20320 at 5024.774 kb on - strand, within CA265_RS20320 at 5024.775 kb on + strand, within CA265_RS20320 at 5024.775 kb on + strand, within CA265_RS20320 at 5024.775 kb on + strand, within CA265_RS20320 at 5024.775 kb on + strand, within CA265_RS20320 at 5024.776 kb on - strand, within CA265_RS20320 at 5024.779 kb on + strand, within CA265_RS20320 at 5024.780 kb on - strand, within CA265_RS20320 at 5024.836 kb on + strand at 5024.892 kb on - strand at 5024.897 kb on + strand at 5024.897 kb on + strand at 5024.978 kb on - strand at 5024.978 kb on - strand at 5024.984 kb on + strand at 5025.020 kb on - strand at 5025.020 kb on - strand at 5025.050 kb on + strand at 5025.114 kb on - strand at 5025.122 kb on + strand at 5025.129 kb on - strand at 5025.275 kb on + strand at 5025.275 kb on + strand at 5025.278 kb on + strand at 5025.288 kb on + strand at 5025.289 kb on - strand at 5025.289 kb on - strand at 5025.297 kb on - strand at 5025.297 kb on - strand at 5025.312 kb on - strand at 5025.351 kb on - strand at 5025.422 kb on + strand at 5025.423 kb on - strand at 5025.452 kb on + strand at 5025.454 kb on + strand at 5025.454 kb on + strand at 5025.472 kb on - strand at 5025.496 kb on + strand at 5025.497 kb on - strand at 5025.514 kb on - strand at 5025.533 kb on + strand at 5025.583 kb on + strand at 5025.584 kb on - strand at 5025.643 kb on - strand at 5025.655 kb on - strand at 5025.757 kb on - strand at 5025.773 kb on + strand at 5025.773 kb on + strand at 5025.773 kb on + strand at 5025.775 kb on + strand at 5025.776 kb on - strand at 5025.794 kb on + strand, within CA265_RS20325 at 5025.794 kb on + strand, within CA265_RS20325 at 5025.795 kb on - strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.835 kb on + strand, within CA265_RS20325 at 5025.836 kb on - strand, within CA265_RS20325 at 5025.862 kb on + strand, within CA265_RS20325 at 5025.862 kb on + strand, within CA265_RS20325 at 5025.864 kb on + strand, within CA265_RS20325 at 5025.881 kb on - strand, within CA265_RS20325 at 5025.910 kb on + strand, within CA265_RS20325 at 5025.911 kb on - strand, within CA265_RS20325 at 5025.911 kb on - strand, within CA265_RS20325 at 5025.911 kb on - strand, within CA265_RS20325 at 5025.919 kb on + strand, within CA265_RS20325 at 5025.923 kb on + strand, within CA265_RS20325 at 5025.923 kb on + strand, within CA265_RS20325 at 5025.954 kb on + strand, within CA265_RS20325 at 5025.992 kb on - strand, within CA265_RS20325 at 5025.992 kb on - strand, within CA265_RS20325 at 5025.992 kb on - strand, within CA265_RS20325 at 5025.995 kb on - strand, within CA265_RS20325 at 5026.015 kb on - strand, within CA265_RS20325 at 5026.066 kb on + strand, within CA265_RS20325 at 5026.077 kb on + strand, within CA265_RS20325 at 5026.078 kb on - strand, within CA265_RS20325 at 5026.093 kb on - strand, within CA265_RS20325 at 5026.219 kb on + strand, within CA265_RS20325 at 5026.263 kb on + strand, within CA265_RS20325 at 5026.264 kb on - strand, within CA265_RS20325 at 5026.277 kb on + strand, within CA265_RS20325 at 5026.278 kb on - strand, within CA265_RS20325 at 5026.278 kb on - strand, within CA265_RS20325 at 5026.283 kb on + strand, within CA265_RS20325 at 5026.284 kb on - strand, within CA265_RS20325 at 5026.315 kb on + strand, within CA265_RS20325 at 5026.384 kb on + strand, within CA265_RS20325 at 5026.481 kb on - strand at 5026.482 kb on + strand at 5026.482 kb on + strand at 5026.483 kb on - strand at 5026.483 kb on - strand at 5026.504 kb on - strand at 5026.512 kb on + strand at 5026.514 kb on + strand at 5026.538 kb on - strand at 5026.538 kb on - strand at 5026.540 kb on + strand at 5026.541 kb on - strand at 5026.543 kb on + strand at 5026.543 kb on + strand at 5026.562 kb on - strand at 5026.593 kb on + strand at 5026.606 kb on + strand at 5026.627 kb on - strand at 5026.633 kb on - strand at 5026.677 kb on + strand at 5026.728 kb on + strand at 5026.732 kb on + strand at 5026.735 kb on + strand at 5026.736 kb on - strand at 5026.753 kb on - strand at 5026.762 kb on - strand at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.905 kb on + strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.906 kb on - strand, within CA265_RS20330 at 5026.907 kb on - strand, within CA265_RS20330 at 5026.923 kb on + strand, within CA265_RS20330 at 5026.929 kb on + strand, within CA265_RS20330 at 5026.983 kb on + strand, within CA265_RS20330 at 5026.986 kb on - strand, within CA265_RS20330 at 5027.009 kb on - strand, within CA265_RS20330 at 5027.029 kb on + strand, within CA265_RS20330 at 5027.031 kb on + strand, within CA265_RS20330 at 5027.038 kb on - strand, within CA265_RS20330 at 5027.042 kb on + strand, within CA265_RS20330 at 5027.043 kb on - strand, within CA265_RS20330 at 5027.043 kb on - strand, within CA265_RS20330 at 5027.049 kb on + strand, within CA265_RS20330 at 5027.176 kb on + strand, within CA265_RS20330 at 5027.179 kb on + strand at 5027.214 kb on + strand, within CA265_RS20330 at 5027.214 kb on + strand, within CA265_RS20330 at 5027.221 kb on - strand, within CA265_RS20330 at 5027.222 kb on + strand, within CA265_RS20330 at 5027.223 kb on - strand, within CA265_RS20330 at 5027.238 kb on + strand, within CA265_RS20330 at 5027.238 kb on + strand, within CA265_RS20330 at 5027.299 kb on - strand, within CA265_RS20330 at 5027.347 kb on + strand, within CA265_RS20330 at 5027.385 kb on - strand, within CA265_RS20330 at 5027.385 kb on - strand, within CA265_RS20330 at 5027.387 kb on - strand, within CA265_RS20330 at 5027.417 kb on + strand, within CA265_RS20330 at 5027.422 kb on - strand, within CA265_RS20330 at 5027.462 kb on + strand, within CA265_RS20330 at 5027.462 kb on + strand, within CA265_RS20330 at 5027.463 kb on - strand, within CA265_RS20330 at 5027.463 kb on - strand, within CA265_RS20330
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 5,024,767 + CA265_RS20320 0.88 +6.9 5,024,774 - CA265_RS20320 0.89 +7.2 5,024,775 + CA265_RS20320 0.89 +7.1 5,024,775 + CA265_RS20320 0.89 +6.4 5,024,775 + CA265_RS20320 0.89 +6.7 5,024,775 + CA265_RS20320 0.89 +6.2 5,024,776 - CA265_RS20320 0.89 +7.3 5,024,779 + CA265_RS20320 0.89 +6.8 5,024,780 - CA265_RS20320 0.89 +7.5 5,024,836 + +7.5 5,024,892 - +6.8 5,024,897 + +6.4 5,024,897 + +6.6 5,024,978 - +7.2 5,024,978 - +6.9 5,024,984 + +6.9 5,025,020 - +7.3 5,025,020 - +7.6 5,025,050 + +6.2 5,025,114 - +7.5 5,025,122 + +7.6 5,025,129 - +1.0 5,025,275 + +3.0 5,025,275 + +2.2 5,025,278 + +0.8 5,025,288 + +2.6 5,025,289 - -3.2 5,025,289 - +0.1 5,025,297 - -3.5 5,025,297 - -2.9 5,025,312 - -3.2 5,025,351 - -3.7 5,025,422 + +2.3 5,025,423 - -2.5 5,025,452 + +2.1 5,025,454 + +2.6 5,025,454 + +1.4 5,025,472 - -4.2 5,025,496 + +2.8 5,025,497 - -2.7 5,025,514 - -1.9 5,025,533 + +2.2 5,025,583 + +1.8 5,025,584 - -2.8 5,025,643 - -1.2 5,025,655 - -1.2 5,025,757 - -0.2 5,025,773 + +1.9 5,025,773 + +2.4 5,025,773 + +1.7 5,025,775 + +2.1 5,025,776 - -0.4 5,025,794 + CA265_RS20325 0.11 +0.6 5,025,794 + CA265_RS20325 0.11 +2.5 5,025,795 - CA265_RS20325 0.11 -0.1 5,025,835 + CA265_RS20325 0.16 +3.6 5,025,835 + CA265_RS20325 0.16 +1.3 5,025,835 + CA265_RS20325 0.16 +1.7 5,025,835 + CA265_RS20325 0.16 +2.1 5,025,836 - CA265_RS20325 0.16 -0.5 5,025,862 + CA265_RS20325 0.20 +0.3 5,025,862 + CA265_RS20325 0.20 +1.0 5,025,864 + CA265_RS20325 0.20 +1.4 5,025,881 - CA265_RS20325 0.22 +2.3 5,025,910 + CA265_RS20325 0.26 +2.1 5,025,911 - CA265_RS20325 0.26 +1.0 5,025,911 - CA265_RS20325 0.26 +0.6 5,025,911 - CA265_RS20325 0.26 +0.3 5,025,919 + CA265_RS20325 0.27 +1.4 5,025,923 + CA265_RS20325 0.27 +2.1 5,025,923 + CA265_RS20325 0.27 +1.7 5,025,954 + CA265_RS20325 0.31 +1.9 5,025,992 - CA265_RS20325 0.36 +0.4 5,025,992 - CA265_RS20325 0.36 +1.3 5,025,992 - CA265_RS20325 0.36 +1.4 5,025,995 - CA265_RS20325 0.37 +1.3 5,026,015 - CA265_RS20325 0.39 +0.3 5,026,066 + CA265_RS20325 0.46 +0.9 5,026,077 + CA265_RS20325 0.47 +1.4 5,026,078 - CA265_RS20325 0.47 +0.4 5,026,093 - CA265_RS20325 0.49 +1.5 5,026,219 + CA265_RS20325 0.66 +1.5 5,026,263 + CA265_RS20325 0.71 +2.6 5,026,264 - CA265_RS20325 0.71 -0.2 5,026,277 + CA265_RS20325 0.73 +0.9 5,026,278 - CA265_RS20325 0.73 +1.0 5,026,278 - CA265_RS20325 0.73 +1.2 5,026,283 + CA265_RS20325 0.74 +1.7 5,026,284 - CA265_RS20325 0.74 +0.7 5,026,315 + CA265_RS20325 0.78 +1.3 5,026,384 + CA265_RS20325 0.87 +0.4 5,026,481 - +0.5 5,026,482 + +1.6 5,026,482 + +1.4 5,026,483 - +1.1 5,026,483 - +1.1 5,026,504 - +0.6 5,026,512 + +0.6 5,026,514 + +0.9 5,026,538 - +0.5 5,026,538 - +1.1 5,026,540 + +1.2 5,026,541 - +1.1 5,026,543 + +0.2 5,026,543 + +0.4 5,026,562 - +1.5 5,026,593 + +0.7 5,026,606 + +0.8 5,026,627 - +2.7 5,026,633 - -0.8 5,026,677 + +0.0 5,026,728 + +1.7 5,026,732 + +1.2 5,026,735 + +0.6 5,026,736 - -1.3 5,026,753 - -0.0 5,026,762 - -0.1 5,026,905 + CA265_RS20330 0.14 +0.6 5,026,905 + CA265_RS20330 0.14 +0.1 5,026,905 + CA265_RS20330 0.14 +1.2 5,026,905 + CA265_RS20330 0.14 -0.4 5,026,905 + CA265_RS20330 0.14 +1.2 5,026,906 - CA265_RS20330 0.14 -0.6 5,026,906 - CA265_RS20330 0.14 -0.4 5,026,906 - CA265_RS20330 0.14 +0.2 5,026,906 - CA265_RS20330 0.14 -0.1 5,026,906 - CA265_RS20330 0.14 +0.0 5,026,906 - CA265_RS20330 0.14 -0.3 5,026,906 - CA265_RS20330 0.14 -0.2 5,026,906 - CA265_RS20330 0.14 +0.8 5,026,907 - CA265_RS20330 0.14 +1.5 5,026,923 + CA265_RS20330 0.15 +0.3 5,026,929 + CA265_RS20330 0.16 +0.4 5,026,983 + CA265_RS20330 0.19 +1.1 5,026,986 - CA265_RS20330 0.20 -0.7 5,027,009 - CA265_RS20330 0.21 -0.7 5,027,029 + CA265_RS20330 0.23 +2.1 5,027,031 + CA265_RS20330 0.23 +0.7 5,027,038 - CA265_RS20330 0.23 -0.8 5,027,042 + CA265_RS20330 0.23 +1.1 5,027,043 - CA265_RS20330 0.24 +2.0 5,027,043 - CA265_RS20330 0.24 -2.2 5,027,049 + CA265_RS20330 0.24 +0.9 5,027,176 + CA265_RS20330 0.33 -0.2 5,027,179 + +3.6 5,027,214 + CA265_RS20330 0.35 +0.4 5,027,214 + CA265_RS20330 0.35 +0.6 5,027,221 - CA265_RS20330 0.36 -1.2 5,027,222 + CA265_RS20330 0.36 +0.7 5,027,223 - CA265_RS20330 0.36 +0.6 5,027,238 + CA265_RS20330 0.37 +0.1 5,027,238 + CA265_RS20330 0.37 -0.2 5,027,299 - CA265_RS20330 0.41 -0.1 5,027,347 + CA265_RS20330 0.44 +1.5 5,027,385 - CA265_RS20330 0.47 +0.8 5,027,385 - CA265_RS20330 0.47 -1.0 5,027,387 - CA265_RS20330 0.47 -0.1 5,027,417 + CA265_RS20330 0.49 +0.2 5,027,422 - CA265_RS20330 0.49 +0.0 5,027,462 + CA265_RS20330 0.52 +0.9 5,027,462 + CA265_RS20330 0.52 +0.7 5,027,463 - CA265_RS20330 0.52 +0.6 5,027,463 - CA265_RS20330 0.52 +0.8
Or see this region's nucleotide sequence