Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19795

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
4,896,355	-		CA265_RS19790	0.56	-0.0
4,896,420	+		CA265_RS19790	0.59	-2.4
4,896,421	-		CA265_RS19790	0.59	+2.1
4,896,421	-		CA265_RS19790	0.59	+0.0
4,896,421	-		CA265_RS19790	0.59	+2.2
4,896,441	+		CA265_RS19790	0.60	+1.0
4,896,441	+		CA265_RS19790	0.60	-1.8
4,896,441	+		CA265_RS19790	0.60	-1.9
4,896,444	-		CA265_RS19790	0.60	+1.2
4,896,449	+		CA265_RS19790	0.61	-1.8
4,896,460	+		CA265_RS19790	0.61	-2.7
4,896,502	+		CA265_RS19790	0.64	-1.5
4,896,503	-		CA265_RS19790	0.64	+1.0
4,896,523	+		CA265_RS19790	0.65	-0.6
4,896,557	-				-0.0
4,896,557	-		CA265_RS19790	0.67	+1.3
4,896,557	-		CA265_RS19790	0.67	+0.4
4,896,559	+		CA265_RS19790	0.67	-2.4
4,896,562	+		CA265_RS19790	0.67	-1.8
4,896,587	+		CA265_RS19790	0.68	-2.7
4,896,597	+		CA265_RS19790	0.69	+1.0
4,896,597	+		CA265_RS19790	0.69	-3.9
4,896,598	-		CA265_RS19790	0.69	+1.1
4,896,598	-		CA265_RS19790	0.69	+0.6
4,896,623	-		CA265_RS19790	0.70	-0.0
4,896,672	-		CA265_RS19790	0.73	-0.5
4,896,672	-		CA265_RS19790	0.73	-0.4
4,896,681	+		CA265_RS19790	0.74	-0.4
4,896,773	+		CA265_RS19790	0.79	-2.8
4,896,861	-		CA265_RS19790	0.83	+0.5
4,896,905	+		CA265_RS19790	0.86	-3.6
4,896,912	+		CA265_RS19790	0.86	-3.7
4,896,956	-		CA265_RS19790	0.89	+0.5
4,896,956	-		CA265_RS19790	0.89	+0.2
4,897,042	+				-3.8
4,897,042	+				-4.3
4,897,042	+				-3.8
4,897,043	-				+0.6
4,897,047	-				+1.0
4,897,051	-				+0.3
4,897,053	+				-3.9
4,897,053	+				-2.4
4,897,054	-				-0.1
4,897,108	+				-3.7
4,897,131	+				-2.4
4,897,133	+				-1.2
4,897,133	+				-3.3
4,897,134	-				-0.4
4,897,134	-				+0.1
4,897,181	-				-0.4
4,897,197	-				+0.2
4,897,291	+				+3.0
4,897,295	+				+3.7
4,897,344	+				+5.2
4,897,345	-				+5.5
4,897,367	+				+5.2
4,897,392	-				+4.9
4,897,523	+				+4.1
4,897,562	-				+4.9
4,897,653	-		CA265_RS19795	0.13	+4.5
4,897,656	-		CA265_RS19795	0.13	+3.3
4,897,719	-		CA265_RS19795	0.15	+4.8
4,897,754	+		CA265_RS19795	0.16	+5.0
4,897,778	-		CA265_RS19795	0.17	+5.0
4,897,781	+		CA265_RS19795	0.17	+4.6
4,897,782	-		CA265_RS19795	0.17	+5.0
4,897,831	+		CA265_RS19795	0.19	+5.1
4,897,871	-		CA265_RS19795	0.21	+5.1
4,897,893	-		CA265_RS19795	0.21	+5.6
4,897,897	+		CA265_RS19795	0.21	+4.7
4,897,898	-		CA265_RS19795	0.22	+5.5
4,898,000	+		CA265_RS19795	0.25	+4.9
4,898,027	-		CA265_RS19795	0.26	+5.4
4,898,037	+		CA265_RS19795	0.26	+5.3
4,898,037	+		CA265_RS19795	0.26	+5.1
4,898,038	-		CA265_RS19795	0.27	+5.7
4,898,137	+		CA265_RS19795	0.30	+4.9
4,898,166	+		CA265_RS19795	0.31	+4.9
4,898,166	+		CA265_RS19795	0.31	+5.5
4,898,256	+		CA265_RS19795	0.34	+5.5
4,898,257	-		CA265_RS19795	0.34	+4.9
4,898,257	-		CA265_RS19795	0.34	+5.8
4,898,258	+		CA265_RS19795	0.34	+5.3
4,898,259	-		CA265_RS19795	0.34	+4.7
4,898,318	+		CA265_RS19795	0.37	+5.2
4,898,339	+		CA265_RS19795	0.37	+5.3
4,898,339	+		CA265_RS19795	0.37	+5.6
4,898,348	+		CA265_RS19795	0.38	+5.6
4,898,405	-		CA265_RS19795	0.40	+5.0
4,898,426	+		CA265_RS19795	0.40	+5.3
4,898,427	-		CA265_RS19795	0.40	+5.7
4,898,427	-				+6.6
4,898,481	+		CA265_RS19795	0.42	+5.7
4,898,481	+		CA265_RS19795	0.42	+5.1
4,898,481	+		CA265_RS19795	0.42	+5.0
4,898,481	+		CA265_RS19795	0.42	+5.1
4,898,482	-		CA265_RS19795	0.42	+5.7
4,898,549	+		CA265_RS19795	0.45	+5.1
4,898,573	-		CA265_RS19795	0.46	+4.7
4,898,693	+		CA265_RS19795	0.50	+5.4
4,898,693	+		CA265_RS19795	0.50	+5.8
4,898,693	+		CA265_RS19795	0.50	+5.5
4,898,694	-		CA265_RS19795	0.50	+4.5
4,898,694	-		CA265_RS19795	0.50	+5.2
4,898,698	+		CA265_RS19795	0.50	+5.1
4,898,798	+		CA265_RS19795	0.54	+4.9
4,898,826	-		CA265_RS19795	0.55	+5.1
4,898,832	-		CA265_RS19795	0.55	+5.7
4,898,855	-		CA265_RS19795	0.56	+5.5
4,898,856	+		CA265_RS19795	0.56	+5.2
4,898,858	+		CA265_RS19795	0.56	-0.0
4,898,859	-		CA265_RS19795	0.56	+5.7
4,898,899	-		CA265_RS19795	0.57	+3.6
4,898,978	+		CA265_RS19795	0.60	+5.2
4,899,015	-		CA265_RS19795	0.61	+5.2
4,899,044	+		CA265_RS19795	0.62	+5.2
4,899,114	+		CA265_RS19795	0.65	+5.3
4,899,115	-		CA265_RS19795	0.65	+5.3
4,899,146	+		CA265_RS19795	0.66	+5.5
4,899,147	-		CA265_RS19795	0.66	+5.7
4,899,151	-		CA265_RS19795	0.66	+5.6
4,899,151	-		CA265_RS19795	0.66	+5.2
4,899,151	-		CA265_RS19795	0.66	+5.3
4,899,168	+		CA265_RS19795	0.67	+5.6
4,899,171	-		CA265_RS19795	0.67	+5.2
4,899,206	+		CA265_RS19795	0.68	+5.1
4,899,222	-		CA265_RS19795	0.69	+5.1
4,899,233	+		CA265_RS19795	0.69	+5.0
4,899,267	-		CA265_RS19795	0.70	+5.1
4,899,304	+		CA265_RS19795	0.72	+5.1
4,899,329	+		CA265_RS19795	0.73	+4.9
4,899,341	+		CA265_RS19795	0.73	+5.3
4,899,349	-		CA265_RS19795	0.73	+6.0
4,899,391	-		CA265_RS19795	0.75	+5.6
4,899,391	-		CA265_RS19795	0.75	+3.4
4,899,425	-		CA265_RS19795	0.76	+5.8
4,899,454	-		CA265_RS19795	0.77	+5.5
4,899,454	-		CA265_RS19795	0.77	+4.8
4,899,465	-		CA265_RS19795	0.77	+4.9
4,899,468	+		CA265_RS19795	0.78	+5.0
4,899,496	-		CA265_RS19795	0.79	+5.2
4,899,511	+		CA265_RS19795	0.79	+5.3
4,899,553	+		CA265_RS19795	0.81	+4.9
4,899,585	-		CA265_RS19795	0.82	+3.9
4,899,617	-		CA265_RS19795	0.83	+5.4
4,899,621	-		CA265_RS19795	0.83	+5.4
4,899,634	-		CA265_RS19795	0.84	+4.3
4,899,690	+		CA265_RS19795	0.86	+5.1
4,899,711	+		CA265_RS19795	0.86	+4.8
4,899,711	+		CA265_RS19795	0.86	+4.9
4,899,731	+		CA265_RS19795	0.87	-1.0
4,899,731	+		CA265_RS19795	0.87	+5.8
4,899,743	+		CA265_RS19795	0.87	+4.9
4,899,808	+		CA265_RS19795	0.90	+5.4
4,899,809	-		CA265_RS19795	0.90	+4.9
4,899,831	+				+5.7
4,899,875	+				+5.1
4,899,876	-				+5.4
4,899,940	+				+4.3
4,899,979	-				+5.6
4,899,986	+				+5.0
4,900,011	+				+6.4
4,900,014	-				+5.1
4,900,119	-				+4.8
4,900,119	-				+4.7
4,900,120	+				+0.4
4,900,121	-				+5.2
4,900,121	-				+4.2
4,900,129	-				+4.4
4,900,139	-				+4.5
4,900,173	+				+0.2
4,900,230	+		CA265_RS19800	0.17	-1.9
4,900,230	+		CA265_RS19800	0.17	-2.4
4,900,249	+		CA265_RS19800	0.19	-0.1
4,900,281	+		CA265_RS19800	0.23	-0.5
4,900,360	+		CA265_RS19800	0.33	+0.0
4,900,361	-		CA265_RS19800	0.33	+3.2
4,900,442	-		CA265_RS19800	0.44	+3.5
4,900,450	+		CA265_RS19800	0.45	-0.9
4,900,450	+		CA265_RS19800	0.45	-0.7
4,900,516	-		CA265_RS19800	0.53	+2.5
4,900,525	+		CA265_RS19800	0.54	+0.3
4,900,526	-		CA265_RS19800	0.54	+2.7
4,900,594	+		CA265_RS19800	0.63	-0.6
4,900,612	-		CA265_RS19800	0.65	+1.3
4,900,612	-		CA265_RS19800	0.65	+1.4
4,900,620	-		CA265_RS19800	0.66	+1.1
4,900,663	+		CA265_RS19800	0.72	+0.2
4,900,713	+		CA265_RS19800	0.78	-0.7
4,900,713	+		CA265_RS19800	0.78	-1.7
4,900,730	-		CA265_RS19800	0.80	+2.0
4,900,735	-		CA265_RS19800	0.81	+1.0
4,900,796	-		CA265_RS19800	0.89	-0.0
4,900,796	-		CA265_RS19800	0.89	+1.3
4,900,902	+				+0.2
4,900,907	-				-0.1
4,900,913	-				+0.3
4,900,937	+				-0.1
4,900,938	-				+0.9
4,900,938	-				-0.1
4,900,938	-				-0.3
4,900,941	+				-0.5
4,900,943	-				-0.1
4,900,968	-				+0.4
4,900,985	+				+0.2
4,901,050	+		CA265_RS19805	0.20	-0.3