Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS19170

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS19165 and CA265_RS19170 are separated by 62 nucleotidesCA265_RS19170 and CA265_RS19175 are separated by 202 nucleotides CA265_RS19165: CA265_RS19165 - serine hydroxymethyltransferase, at 4,763,093 to 4,764,364 _RS19165 CA265_RS19170: CA265_RS19170 - chromosome segregation protein ScpA, at 4,764,427 to 4,765,170 _RS19170 CA265_RS19175: CA265_RS19175 - 1-deoxy-D-xylulose-5-phosphate synthase, at 4,765,373 to 4,767,301 _RS19175 Position (kb) 4764 4765 4766Strain fitness (log2 ratio) -1 0 1 2at 4763.488 kb on - strand, within CA265_RS19165at 4763.488 kb on - strand, within CA265_RS19165at 4763.722 kb on + strand, within CA265_RS19165at 4763.960 kb on + strand, within CA265_RS19165at 4764.117 kb on - strand, within CA265_RS19165at 4764.260 kb on + strandat 4764.269 kb on - strandat 4764.272 kb on + strandat 4764.335 kb on - strandat 4764.418 kb on + strandat 4764.448 kb on - strandat 4764.540 kb on + strand, within CA265_RS19170at 4764.541 kb on - strand, within CA265_RS19170at 4764.583 kb on - strand, within CA265_RS19170at 4764.586 kb on - strand, within CA265_RS19170at 4764.630 kb on + strand, within CA265_RS19170at 4764.631 kb on - strand, within CA265_RS19170at 4764.632 kb on + strand, within CA265_RS19170at 4764.633 kb on - strand, within CA265_RS19170at 4764.651 kb on + strand, within CA265_RS19170at 4764.680 kb on + strand, within CA265_RS19170at 4764.717 kb on + strand, within CA265_RS19170at 4764.719 kb on + strand, within CA265_RS19170at 4764.789 kb on + strand, within CA265_RS19170at 4764.790 kb on - strand, within CA265_RS19170at 4764.874 kb on + strand, within CA265_RS19170at 4764.904 kb on - strand, within CA265_RS19170at 4764.925 kb on + strand, within CA265_RS19170at 4765.007 kb on - strand, within CA265_RS19170at 4765.032 kb on + strand, within CA265_RS19170at 4765.033 kb on - strand, within CA265_RS19170at 4765.035 kb on - strand, within CA265_RS19170at 4765.035 kb on - strand, within CA265_RS19170at 4765.083 kb on + strand, within CA265_RS19170at 4765.084 kb on - strand, within CA265_RS19170at 4765.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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4,763,488 - CA265_RS19165 0.31 +0.2
4,763,488 - CA265_RS19165 0.31 -1.5
4,763,722 + CA265_RS19165 0.49 -0.0
4,763,960 + CA265_RS19165 0.68 -0.3
4,764,117 - CA265_RS19165 0.81 +2.0
4,764,260 + -0.5
4,764,269 - -1.3
4,764,272 + -0.8
4,764,335 - -0.2
4,764,418 + +0.0
4,764,448 - +0.8
4,764,540 + CA265_RS19170 0.15 +0.4
4,764,541 - CA265_RS19170 0.15 -0.3
4,764,583 - CA265_RS19170 0.21 -0.0
4,764,586 - CA265_RS19170 0.21 +0.8
4,764,630 + CA265_RS19170 0.27 +1.4
4,764,631 - CA265_RS19170 0.27 +1.4
4,764,632 + CA265_RS19170 0.28 +0.4
4,764,633 - CA265_RS19170 0.28 +0.8
4,764,651 + CA265_RS19170 0.30 +0.5
4,764,680 + CA265_RS19170 0.34 -0.3
4,764,717 + CA265_RS19170 0.39 -0.4
4,764,719 + CA265_RS19170 0.39 +0.5
4,764,789 + CA265_RS19170 0.49 +0.2
4,764,790 - CA265_RS19170 0.49 +0.1
4,764,874 + CA265_RS19170 0.60 +0.7
4,764,904 - CA265_RS19170 0.64 +1.1
4,764,925 + CA265_RS19170 0.67 -0.9
4,765,007 - CA265_RS19170 0.78 +0.6
4,765,032 + CA265_RS19170 0.81 +1.1
4,765,033 - CA265_RS19170 0.81 -1.0
4,765,035 - CA265_RS19170 0.82 +0.3
4,765,035 - CA265_RS19170 0.82 +0.9
4,765,083 + CA265_RS19170 0.88 +1.0
4,765,084 - CA265_RS19170 0.88 +0.5
4,765,292 - +0.3

Or see this region's nucleotide sequence