Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS17140 and CA265_RS17145 are separated by 804 nucleotides CA265_RS17145 and CA265_RS17150 are separated by 348 nucleotides
CA265_RS17140: CA265_RS17140 - thioredoxin family protein, at 4,277,455 to 4,277,787
_RS17140
CA265_RS17145: CA265_RS17145 - malate:quinone oxidoreductase, at 4,278,592 to 4,280,109
_RS17145
CA265_RS17150: CA265_RS17150 - hypothetical protein, at 4,280,458 to 4,281,798
_RS17150
Position (kb) 4278
4279
4280
4281 Strain fitness (log2 ratio) -1
0
1
2
3 at 4277.638 kb on + strand, within CA265_RS17140 at 4277.639 kb on - strand, within CA265_RS17140 at 4277.639 kb on - strand, within CA265_RS17140 at 4277.709 kb on + strand, within CA265_RS17140 at 4277.742 kb on + strand, within CA265_RS17140 at 4277.743 kb on - strand, within CA265_RS17140 at 4277.743 kb on - strand, within CA265_RS17140 at 4277.786 kb on - strand at 4277.793 kb on + strand at 4277.794 kb on - strand at 4278.018 kb on + strand at 4278.019 kb on - strand at 4278.021 kb on + strand at 4278.022 kb on - strand at 4278.082 kb on + strand at 4278.256 kb on + strand at 4278.275 kb on + strand at 4278.390 kb on - strand at 4278.431 kb on + strand at 4278.442 kb on - strand at 4278.477 kb on - strand at 4278.510 kb on - strand at 4278.519 kb on + strand at 4278.520 kb on - strand at 4278.520 kb on - strand at 4278.571 kb on - strand at 4278.571 kb on - strand at 4278.593 kb on + strand at 4278.690 kb on + strand at 4278.690 kb on + strand at 4278.823 kb on - strand, within CA265_RS17145 at 4278.868 kb on - strand, within CA265_RS17145 at 4278.917 kb on + strand, within CA265_RS17145 at 4279.229 kb on + strand, within CA265_RS17145 at 4279.236 kb on + strand, within CA265_RS17145 at 4279.237 kb on - strand, within CA265_RS17145 at 4279.511 kb on - strand, within CA265_RS17145 at 4279.540 kb on - strand, within CA265_RS17145 at 4279.562 kb on - strand, within CA265_RS17145 at 4279.712 kb on + strand, within CA265_RS17145 at 4279.717 kb on + strand, within CA265_RS17145 at 4279.718 kb on - strand, within CA265_RS17145 at 4279.770 kb on + strand, within CA265_RS17145 at 4279.805 kb on + strand, within CA265_RS17145 at 4279.821 kb on + strand, within CA265_RS17145 at 4279.972 kb on + strand at 4280.113 kb on - strand at 4280.135 kb on - strand at 4280.198 kb on - strand at 4280.608 kb on - strand, within CA265_RS17150 at 4280.616 kb on + strand, within CA265_RS17150 at 4280.674 kb on - strand, within CA265_RS17150 at 4280.728 kb on - strand, within CA265_RS17150 at 4280.783 kb on + strand, within CA265_RS17150 at 4280.962 kb on - strand, within CA265_RS17150 at 4281.006 kb on - strand, within CA265_RS17150 at 4281.007 kb on + strand, within CA265_RS17150 at 4281.008 kb on - strand, within CA265_RS17150 at 4281.008 kb on - strand, within CA265_RS17150 at 4281.008 kb on - strand, within CA265_RS17150 at 4281.100 kb on - strand, within CA265_RS17150
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 4,277,638 + CA265_RS17140 0.55 -1.6 4,277,639 - CA265_RS17140 0.55 -0.2 4,277,639 - CA265_RS17140 0.55 +0.1 4,277,709 + CA265_RS17140 0.76 -0.1 4,277,742 + CA265_RS17140 0.86 +0.9 4,277,743 - CA265_RS17140 0.86 -0.6 4,277,743 - CA265_RS17140 0.86 -0.6 4,277,786 - -0.8 4,277,793 + -0.4 4,277,794 - +0.7 4,278,018 + +0.6 4,278,019 - -0.9 4,278,021 + -0.6 4,278,022 - -0.2 4,278,082 + +0.2 4,278,256 + -1.1 4,278,275 + +0.9 4,278,390 - -0.6 4,278,431 + +1.7 4,278,442 - +1.4 4,278,477 - -0.5 4,278,510 - +1.2 4,278,519 + +2.1 4,278,520 - -0.2 4,278,520 - -0.5 4,278,571 - -0.3 4,278,571 - +0.4 4,278,593 + +0.3 4,278,690 + +2.2 4,278,690 + +1.7 4,278,823 - CA265_RS17145 0.15 +2.8 4,278,868 - CA265_RS17145 0.18 +3.5 4,278,917 + CA265_RS17145 0.21 +2.5 4,279,229 + CA265_RS17145 0.42 +3.2 4,279,236 + CA265_RS17145 0.42 +2.1 4,279,237 - CA265_RS17145 0.42 +2.4 4,279,511 - CA265_RS17145 0.61 +1.0 4,279,540 - CA265_RS17145 0.62 +1.9 4,279,562 - CA265_RS17145 0.64 +0.0 4,279,712 + CA265_RS17145 0.74 +2.3 4,279,717 + CA265_RS17145 0.74 +2.9 4,279,718 - CA265_RS17145 0.74 +3.1 4,279,770 + CA265_RS17145 0.78 +2.9 4,279,805 + CA265_RS17145 0.80 +2.3 4,279,821 + CA265_RS17145 0.81 +2.4 4,279,972 + +1.4 4,280,113 - +3.1 4,280,135 - -1.2 4,280,198 - -0.4 4,280,608 - CA265_RS17150 0.11 +0.3 4,280,616 + CA265_RS17150 0.12 -0.4 4,280,674 - CA265_RS17150 0.16 -0.2 4,280,728 - CA265_RS17150 0.20 -0.5 4,280,783 + CA265_RS17150 0.24 +0.8 4,280,962 - CA265_RS17150 0.38 +0.4 4,281,006 - CA265_RS17150 0.41 +0.2 4,281,007 + CA265_RS17150 0.41 +0.7 4,281,008 - CA265_RS17150 0.41 -0.1 4,281,008 - CA265_RS17150 0.41 -0.6 4,281,008 - CA265_RS17150 0.41 -0.8 4,281,100 - CA265_RS17150 0.48 +0.0
Or see this region's nucleotide sequence