Experiment: R2A with Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15170 and CA265_RS15175 are separated by 171 nucleotides CA265_RS15175 and CA265_RS15180 are separated by 57 nucleotides
CA265_RS15170: CA265_RS15170 - peptidase M23, at 3,819,484 to 3,821,217
_RS15170
CA265_RS15175: CA265_RS15175 - thioredoxin-dependent thiol peroxidase, at 3,821,389 to 3,821,853
_RS15175
CA265_RS15180: CA265_RS15180 - transketolase, at 3,821,911 to 3,822,756
_RS15180
Position (kb)
3821
3822 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3820.508 kb on - strand at 3820.610 kb on - strand, within CA265_RS15170 at 3820.617 kb on + strand, within CA265_RS15170 at 3820.618 kb on - strand, within CA265_RS15170 at 3820.618 kb on - strand, within CA265_RS15170 at 3820.621 kb on - strand, within CA265_RS15170 at 3820.725 kb on + strand, within CA265_RS15170 at 3820.726 kb on - strand, within CA265_RS15170 at 3820.773 kb on - strand, within CA265_RS15170 at 3820.824 kb on - strand, within CA265_RS15170 at 3820.900 kb on - strand, within CA265_RS15170 at 3821.001 kb on + strand, within CA265_RS15170 at 3821.059 kb on - strand at 3821.059 kb on - strand at 3821.149 kb on - strand at 3821.194 kb on + strand at 3821.287 kb on + strand at 3821.293 kb on - strand at 3821.294 kb on + strand at 3821.294 kb on + strand at 3821.295 kb on - strand at 3821.295 kb on - strand at 3821.295 kb on - strand at 3821.305 kb on - strand at 3821.306 kb on + strand at 3821.307 kb on - strand at 3821.399 kb on + strand at 3821.400 kb on - strand at 3821.428 kb on - strand at 3821.428 kb on - strand at 3821.472 kb on + strand, within CA265_RS15175 at 3821.472 kb on + strand, within CA265_RS15175 at 3821.515 kb on - strand, within CA265_RS15175 at 3821.597 kb on + strand, within CA265_RS15175 at 3821.598 kb on - strand, within CA265_RS15175 at 3821.656 kb on - strand, within CA265_RS15175 at 3821.722 kb on + strand, within CA265_RS15175 at 3821.723 kb on - strand, within CA265_RS15175 at 3821.723 kb on - strand, within CA265_RS15175 at 3821.723 kb on - strand, within CA265_RS15175 at 3821.735 kb on - strand, within CA265_RS15175 at 3821.764 kb on - strand, within CA265_RS15175 at 3821.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml remove 3,820,508 - +2.9 3,820,610 - CA265_RS15170 0.65 +3.2 3,820,617 + CA265_RS15170 0.65 +4.1 3,820,618 - CA265_RS15170 0.65 +3.8 3,820,618 - CA265_RS15170 0.65 +3.6 3,820,621 - CA265_RS15170 0.66 +3.7 3,820,725 + CA265_RS15170 0.72 +3.4 3,820,726 - CA265_RS15170 0.72 +3.7 3,820,773 - CA265_RS15170 0.74 +4.1 3,820,824 - CA265_RS15170 0.77 +4.5 3,820,900 - CA265_RS15170 0.82 +3.8 3,821,001 + CA265_RS15170 0.87 +4.1 3,821,059 - +3.8 3,821,059 - +3.4 3,821,149 - +3.2 3,821,194 + +3.3 3,821,287 + -0.7 3,821,293 - +2.1 3,821,294 + -1.4 3,821,294 + +0.4 3,821,295 - +3.0 3,821,295 - +2.5 3,821,295 - +2.2 3,821,305 - +2.4 3,821,306 + -0.4 3,821,307 - +2.8 3,821,399 + -0.0 3,821,400 - +2.3 3,821,428 - +2.1 3,821,428 - +1.7 3,821,472 + CA265_RS15175 0.18 -0.3 3,821,472 + CA265_RS15175 0.18 +1.8 3,821,515 - CA265_RS15175 0.27 +2.3 3,821,597 + CA265_RS15175 0.45 -2.6 3,821,598 - CA265_RS15175 0.45 +1.5 3,821,656 - CA265_RS15175 0.57 +1.4 3,821,722 + CA265_RS15175 0.72 -2.1 3,821,723 - CA265_RS15175 0.72 +1.0 3,821,723 - CA265_RS15175 0.72 +0.9 3,821,723 - CA265_RS15175 0.72 +0.6 3,821,735 - CA265_RS15175 0.74 +1.2 3,821,764 - CA265_RS15175 0.81 +0.9 3,821,890 + +0.8
Or see this region's nucleotide sequence