Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14025

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
3,527,078	+		CA265_RS14020	0.64	+0.4
3,527,078	+		CA265_RS14020	0.64	+0.1
3,527,114	+		CA265_RS14020	0.66	+1.2
3,527,115	-		CA265_RS14020	0.66	+0.4
3,527,348	-		CA265_RS14020	0.78	+1.5
3,527,359	-		CA265_RS14020	0.79	+0.2
3,527,408	-		CA265_RS14020	0.81	-0.4
3,527,416	-		CA265_RS14020	0.82	+2.8
3,527,472	+		CA265_RS14020	0.85	+0.5
3,527,472	+		CA265_RS14020	0.85	-1.1
3,527,587	-				+1.3
3,527,644	+				+0.4
3,527,645	-				+1.5
3,527,769	+				+1.0
3,527,778	-				-2.1
3,527,779	+				+0.7
3,527,779	+				+0.8
3,527,780	-				-0.4
3,527,780	-				-1.7
3,527,783	+				+0.8
3,527,784	-				-0.6
3,527,785	+				+0.4
3,527,785	+				-0.3
3,527,785	+				-0.7
3,527,786	-				-0.5
3,527,827	+				+0.9
3,527,852	-				+1.0
3,528,182	+				-3.1
3,528,193	+		CA265_RS14025	0.10	-2.3
3,528,213	+		CA265_RS14025	0.12	-1.7
3,528,214	-		CA265_RS14025	0.12	-0.5
3,528,217	+		CA265_RS14025	0.12	-2.3
3,528,289	+		CA265_RS14025	0.18	-0.5
3,528,290	-		CA265_RS14025	0.18	-1.2
3,528,412	+				+1.1
3,528,412	+		CA265_RS14025	0.27	-2.2
3,528,478	-		CA265_RS14025	0.33	-1.6
3,528,489	+		CA265_RS14025	0.33	-2.9
3,528,489	+		CA265_RS14025	0.33	-2.2
3,528,567	+		CA265_RS14025	0.40	-4.5
3,528,664	-		CA265_RS14025	0.47	-4.1
3,528,697	+		CA265_RS14025	0.50	-2.9
3,528,698	-		CA265_RS14025	0.50	-2.4
3,528,749	+		CA265_RS14025	0.54	-0.9
3,528,750	-		CA265_RS14025	0.54	-3.7
3,528,750	-		CA265_RS14025	0.54	-3.1
3,528,751	+		CA265_RS14025	0.54	-2.5
3,528,923	+		CA265_RS14025	0.67	-2.4
3,529,002	+		CA265_RS14025	0.74	-1.8
3,529,011	+		CA265_RS14025	0.74	-0.5
3,529,012	-		CA265_RS14025	0.74	-4.0
3,529,046	+		CA265_RS14025	0.77	-2.4
3,529,047	-		CA265_RS14025	0.77	-0.1
3,529,047	-		CA265_RS14025	0.77	+0.8
3,529,047	-		CA265_RS14025	0.77	-2.7
3,529,070	+		CA265_RS14025	0.79	-2.7
3,529,096	-		CA265_RS14025	0.81	-2.0
3,529,100	+		CA265_RS14025	0.81	-2.1
3,529,125	-		CA265_RS14025	0.83	-2.0
3,529,141	+		CA265_RS14025	0.84	-1.4
3,529,161	-		CA265_RS14025	0.86	-3.0
3,529,260	-				-3.1
3,529,263	-				-3.4
3,529,385	+				-0.2
3,529,386	-				-1.2
3,529,393	-				-0.4
3,529,395	-				+0.1
3,529,395	-				-0.4
3,529,438	-				-0.6
3,529,442	-				-0.5
3,529,564	+				+1.1
3,529,565	-				-0.2
3,529,657	+				-0.1
3,529,664	-				-0.2
3,529,664	-				-0.8
3,529,711	-				-0.5
3,529,711	-				+0.8
3,529,711	-				-0.5
3,529,822	+		CA265_RS14030	0.15	-0.1
3,529,823	-		CA265_RS14030	0.15	-0.4
3,529,823	-		CA265_RS14030	0.15	+0.0
3,529,908	+		CA265_RS14030	0.24	-0.2
3,529,908	+		CA265_RS14030	0.24	-0.0
3,529,909	-		CA265_RS14030	0.24	-0.7
3,529,909	-		CA265_RS14030	0.24	-0.5
3,529,965	+		CA265_RS14030	0.30	-1.3
3,529,965	+		CA265_RS14030	0.30	-0.3
3,529,965	+		CA265_RS14030	0.30	-0.1
3,529,986	+		CA265_RS14030	0.32	-0.3
3,529,986	+		CA265_RS14030	0.32	+0.2
3,529,987	-		CA265_RS14030	0.32	-0.6
3,530,076	-				+3.1
3,530,078	-		CA265_RS14030	0.41	-0.3
3,530,105	+		CA265_RS14030	0.44	+1.0
3,530,109	+		CA265_RS14030	0.45	-0.0
3,530,109	+		CA265_RS14030	0.45	+0.4
3,530,109	+		CA265_RS14030	0.45	-0.0
3,530,110	-		CA265_RS14030	0.45	-0.1
3,530,110	-		CA265_RS14030	0.45	+0.6
3,530,156	+		CA265_RS14030	0.49	-0.3
3,530,157	-		CA265_RS14030	0.49	-0.3
3,530,157	-		CA265_RS14030	0.49	-0.6
3,530,157	-		CA265_RS14030	0.49	+0.9
3,530,164	+		CA265_RS14030	0.50	-0.4
3,530,187	-		CA265_RS14030	0.53	-0.5
3,530,223	-		CA265_RS14030	0.56	+0.9
3,530,223	-		CA265_RS14030	0.56	-0.1
3,530,242	+		CA265_RS14030	0.58	-0.3
3,530,306	+		CA265_RS14030	0.65	-0.2
3,530,307	-		CA265_RS14030	0.65	+1.4
3,530,307	-		CA265_RS14030	0.65	-1.6
3,530,330	+		CA265_RS14030	0.67	+0.1
3,530,330	+		CA265_RS14030	0.67	-0.4