Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13795

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
3,456,453	+		CA265_RS13785	0.81	-0.5
3,456,489	+		CA265_RS13785	0.82	-1.9
3,456,518	+		CA265_RS13785	0.83	+0.1
3,456,538	-		CA265_RS13785	0.84	+0.7
3,456,562	+		CA265_RS13785	0.85	+1.7
3,456,562	+		CA265_RS13785	0.85	-0.4
3,456,562	+		CA265_RS13785	0.85	+0.6
3,456,563	-		CA265_RS13785	0.85	-0.7
3,456,563	-		CA265_RS13785	0.85	+0.4
3,456,674	+		CA265_RS13785	0.89	+1.0
3,456,679	-		CA265_RS13785	0.89	+0.4
3,456,696	-		CA265_RS13785	0.90	+0.8
3,456,696	-		CA265_RS13785	0.90	-0.0
3,456,728	-				-0.9
3,456,728	-				+0.4
3,456,797	-				-0.2
3,456,817	-				-1.1
3,456,831	+				+0.0
3,456,910	-				-1.3
3,456,950	+				-0.4
3,456,951	-				+1.0
3,456,997	+				-0.9
3,457,006	+				-0.4
3,457,007	-				+0.3
3,457,070	+		CA265_RS13790	0.26	-0.1
3,457,070	+		CA265_RS13790	0.26	-1.7
3,457,070	+		CA265_RS13790	0.26	-0.9
3,457,070	+		CA265_RS13790	0.26	-0.1
3,457,071	-		CA265_RS13790	0.26	-1.0
3,457,216	+		CA265_RS13790	0.73	+1.1
3,457,216	+		CA265_RS13790	0.73	-1.6
3,457,273	-				-0.9
3,457,284	+				-1.2
3,457,285	-				-0.6
3,457,364	-				-0.9
3,457,439	-				-0.5
3,457,464	-				+0.0
3,457,464	-				+0.4
3,457,495	-				-0.1
3,457,495	-				+0.6
3,457,495	-				+0.4
3,457,508	+				+0.6
3,457,513	+				-0.1
3,457,630	+				+1.3
3,457,640	+				-0.6
3,457,640	+				+0.4
3,457,640	+				-0.6
3,457,742	-		CA265_RS13795	0.12	-0.4
3,457,757	+		CA265_RS13795	0.13	-0.4
3,457,777	+		CA265_RS13795	0.14	+0.2
3,457,840	+		CA265_RS13795	0.16	-1.1
3,457,841	-		CA265_RS13795	0.16	-0.7
3,457,841	-		CA265_RS13795	0.16	-0.1
3,457,902	+		CA265_RS13795	0.19	-0.3
3,457,961	+		CA265_RS13795	0.21	+0.3
3,458,010	-		CA265_RS13795	0.23	-0.5
3,458,032	-		CA265_RS13795	0.24	-0.3
3,458,048	+		CA265_RS13795	0.25	-1.1
3,458,051	-		CA265_RS13795	0.25	+1.1
3,458,222	-		CA265_RS13795	0.32	-0.7
3,458,238	-		CA265_RS13795	0.33	+0.4
3,458,239	+		CA265_RS13795	0.33	+0.5
3,458,279	+		CA265_RS13795	0.34	-0.1
3,458,306	+		CA265_RS13795	0.35	+0.3
3,458,308	+		CA265_RS13795	0.35	-0.1
3,458,309	-		CA265_RS13795	0.36	+0.4
3,458,346	-		CA265_RS13795	0.37	+0.5
3,458,447	+		CA265_RS13795	0.41	-0.4
3,458,448	-		CA265_RS13795	0.41	+0.3
3,458,455	+		CA265_RS13795	0.41	-1.0
3,458,564	+		CA265_RS13795	0.46	-0.4
3,458,711	+		CA265_RS13795	0.52	-0.3
3,458,768	+		CA265_RS13795	0.54	-0.4
3,458,769	-		CA265_RS13795	0.54	-0.8
3,459,031	+		CA265_RS13795	0.65	-0.7
3,459,031	+		CA265_RS13795	0.65	-0.4
3,459,031	+		CA265_RS13795	0.65	-0.7
3,459,066	-		CA265_RS13795	0.66	-0.1
3,459,077	-		CA265_RS13795	0.67	-0.4
3,459,080	+		CA265_RS13795	0.67	+1.4
3,459,143	-		CA265_RS13795	0.70	+0.8
3,459,143	-		CA265_RS13795	0.70	+0.3
3,459,175	+		CA265_RS13795	0.71	+0.6
3,459,175	+		CA265_RS13795	0.71	-0.9
3,459,187	+		CA265_RS13795	0.71	+0.0
3,459,212	+		CA265_RS13795	0.72	-1.9
3,459,221	-		CA265_RS13795	0.73	-0.8
3,459,296	+		CA265_RS13795	0.76	+1.3
3,459,337	-		CA265_RS13795	0.77	+1.1
3,459,337	-		CA265_RS13795	0.77	-0.4
3,459,343	+		CA265_RS13795	0.78	-0.7
3,459,343	+		CA265_RS13795	0.78	-0.4
3,459,343	+		CA265_RS13795	0.78	-0.4
3,459,344	-		CA265_RS13795	0.78	+0.2
3,459,501	+		CA265_RS13795	0.84	+0.1
3,459,575	-		CA265_RS13795	0.87	-0.9
3,459,576	+		CA265_RS13795	0.87	+0.1
3,459,576	+		CA265_RS13795	0.87	+0.0
3,459,576	+		CA265_RS13795	0.87	-0.8
3,459,577	-		CA265_RS13795	0.87	+0.2
3,459,581	+		CA265_RS13795	0.87	-0.4
3,459,648	-				+0.2
3,459,648	-				-0.6
3,459,658	+				+0.9
3,459,696	-				+0.6
3,459,723	+				-1.2
3,459,810	-				-0.0
3,459,855	+				-0.0
3,459,874	-				+1.1
3,459,891	-				-0.4
3,459,895	-				+0.1
3,459,938	-				-1.1
3,459,938	-				-1.4
3,460,000	-				-1.0
3,460,010	+				-0.3
3,460,010	+				-1.5
3,460,031	-				-0.7
3,460,055	+				+0.2
3,460,075	+				+0.1
3,460,076	-				-0.2
3,460,180	+		CA265_RS13800	0.11	+0.7
3,460,180	+		CA265_RS13800	0.11	-0.2
3,460,181	-		CA265_RS13800	0.11	-0.6
3,460,183	-		CA265_RS13800	0.12	+0.8
3,460,189	+		CA265_RS13800	0.12	-2.8
3,460,210	+		CA265_RS13800	0.13	-0.2
3,460,213	+		CA265_RS13800	0.13	-1.6
3,460,253	-		CA265_RS13800	0.14	-0.6
3,460,295	+		CA265_RS13800	0.16	+0.3
3,460,348	+		CA265_RS13800	0.18	+1.2
3,460,391	-		CA265_RS13800	0.20	-0.4
3,460,653	+		CA265_RS13800	0.30	+0.1
3,460,654	-		CA265_RS13800	0.30	-1.3
3,460,654	-		CA265_RS13800	0.30	+0.7
3,460,689	-		CA265_RS13800	0.32	+2.6
3,460,759	+		CA265_RS13800	0.35	-0.2