Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13100

Experiment: R2A with Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS13095 and CA265_RS13100 are separated by 159 nucleotidesCA265_RS13100 and CA265_RS13105 are separated by 444 nucleotides CA265_RS13095: CA265_RS13095 - thymidylate synthase, at 3,260,840 to 3,261,634 _RS13095 CA265_RS13100: CA265_RS13100 - dihydrofolate reductase, at 3,261,794 to 3,262,282 _RS13100 CA265_RS13105: CA265_RS13105 - protein translocase subunit SecDF, at 3,262,727 to 3,265,708 _RS13105 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -3 -2 -1 0 1at 3260.839 kb on + strandat 3261.632 kb on + strandat 3261.687 kb on + strandat 3261.687 kb on + strandat 3261.688 kb on - strandat 3261.688 kb on - strandat 3261.700 kb on + strandat 3261.714 kb on + strandat 3261.714 kb on + strandat 3262.459 kb on + strandat 3262.460 kb on - strandat 3262.500 kb on - strandat 3262.553 kb on - strandat 3262.553 kb on - strandat 3262.629 kb on - strandat 3262.654 kb on - strandat 3262.655 kb on + strandat 3262.655 kb on + strandat 3262.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.06 mg/ml
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3,260,839 + +0.0
3,261,632 + -0.1
3,261,687 + -0.6
3,261,687 + +0.6
3,261,688 - -1.0
3,261,688 - +0.9
3,261,700 + +1.1
3,261,714 + +0.2
3,261,714 + -2.1
3,262,459 + +0.6
3,262,460 - +0.9
3,262,500 - -0.5
3,262,553 - -0.4
3,262,553 - +0.4
3,262,629 - +0.3
3,262,654 - -3.1
3,262,655 + +0.2
3,262,655 + +0.7
3,262,656 - -1.5

Or see this region's nucleotide sequence