Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12380

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
3,084,638	+		CA265_RS12370	0.82	-0.1
3,084,639	-		CA265_RS12370	0.82	+0.9
3,084,660	+		CA265_RS12370	0.85	+0.6
3,084,725	-				+0.0
3,084,748	+				-0.7
3,084,749	-				-0.6
3,084,768	-				+0.4
3,084,826	+				-0.0
3,084,834	+				-0.3
3,084,910	+				-1.2
3,084,910	+				+0.7
3,084,952	-				-0.1
3,084,968	-				-1.1
3,084,969	+				-0.1
3,084,970	-				+0.3
3,085,032	-		CA265_RS12375	0.11	-0.4
3,085,044	+		CA265_RS12375	0.13	+0.2
3,085,065	-		CA265_RS12375	0.18	+1.1
3,085,089	+		CA265_RS12375	0.22	+0.5
3,085,097	+		CA265_RS12375	0.24	+2.3
3,085,111	+		CA265_RS12375	0.27	+1.4
3,085,111	+		CA265_RS12375	0.27	-0.2
3,085,111	+		CA265_RS12375	0.27	-0.4
3,085,145	+		CA265_RS12375	0.33	+0.3
3,085,238	+		CA265_RS12375	0.52	+0.5
3,085,338	-		CA265_RS12375	0.71	-1.4
3,085,365	+		CA265_RS12375	0.77	-0.5
3,085,366	-		CA265_RS12375	0.77	-0.2
3,085,366	-		CA265_RS12375	0.77	+1.3
3,085,376	+		CA265_RS12375	0.79	+0.8
3,085,376	+		CA265_RS12375	0.79	+0.5
3,085,430	+		CA265_RS12375	0.90	-0.1
3,085,430	+		CA265_RS12375	0.90	+1.2
3,085,430	+		CA265_RS12375	0.90	+0.3
3,085,431	-		CA265_RS12375	0.90	-1.9
3,085,431	-		CA265_RS12375	0.90	+1.4
3,085,439	+				+0.7
3,085,439	+				+0.5
3,085,499	+				+0.1
3,085,500	-				-0.7
3,085,502	+				+0.8
3,085,532	-				-0.9
3,085,611	+				-0.7
3,085,618	+				+0.5
3,085,628	-				+1.1
3,085,635	+				+1.0
3,085,680	-				-0.2
3,085,786	+				-1.0
3,085,933	+		CA265_RS12380	0.14	+0.1
3,085,933	+		CA265_RS12380	0.14	-0.7
3,085,935	+		CA265_RS12380	0.14	-0.7
3,085,938	+		CA265_RS12380	0.14	+1.5
3,085,968	+		CA265_RS12380	0.16	+1.3
3,085,982	+		CA265_RS12380	0.16	-0.1
3,086,021	+		CA265_RS12380	0.18	+1.7
3,086,123	+		CA265_RS12380	0.23	+1.4
3,086,123	+		CA265_RS12380	0.23	+0.6
3,086,190	+		CA265_RS12380	0.26	+0.0
3,086,201	-		CA265_RS12380	0.26	+1.5
3,086,232	-		CA265_RS12380	0.28	+1.3
3,086,306	+		CA265_RS12380	0.31	+1.2
3,086,334	-		CA265_RS12380	0.32	-0.9
3,086,496	-		CA265_RS12380	0.40	+0.0
3,086,496	-		CA265_RS12380	0.40	-0.1
3,086,496	-		CA265_RS12380	0.40	+0.4
3,086,512	-		CA265_RS12380	0.40	+0.6
3,086,535	+		CA265_RS12380	0.41	+1.1
3,086,536	-		CA265_RS12380	0.41	+0.6
3,086,567	+		CA265_RS12380	0.43	-0.0
3,086,575	+		CA265_RS12380	0.43	+0.1
3,086,609	+		CA265_RS12380	0.45	+0.5
3,086,611	+		CA265_RS12380	0.45	+0.0
3,086,611	+		CA265_RS12380	0.45	-0.4
3,086,612	-		CA265_RS12380	0.45	+0.6
3,086,708	+		CA265_RS12380	0.49	+0.4
3,086,708	+		CA265_RS12380	0.49	+0.1
3,086,748	-		CA265_RS12380	0.51	-0.6
3,086,840	+		CA265_RS12380	0.55	+0.2
3,086,841	-		CA265_RS12380	0.55	+0.2
3,086,885	+		CA265_RS12380	0.57	-0.4
3,087,057	+		CA265_RS12380	0.65	-0.3
3,087,058	-		CA265_RS12380	0.65	+0.2
3,087,227	+		CA265_RS12380	0.73	-0.3
3,087,228	-		CA265_RS12380	0.73	+0.3
3,087,228	-		CA265_RS12380	0.73	+0.3
3,087,242	+		CA265_RS12380	0.74	-0.6
3,087,300	+		CA265_RS12380	0.76	-0.1
3,087,531	-		CA265_RS12380	0.87	+0.3
3,087,532	+		CA265_RS12380	0.87	-1.1
3,087,543	+		CA265_RS12380	0.87	+0.3
3,087,543	+		CA265_RS12380	0.87	+0.3
3,087,544	-		CA265_RS12380	0.87	-0.7
3,087,578	+		CA265_RS12380	0.89	+0.1
3,087,630	-				+0.5
3,087,818	+				-0.5
3,087,819	-				+0.0
3,087,822	-				+0.3
3,087,826	+				-0.6
3,087,827	-				+0.7
3,087,827	-				+0.7
3,087,831	+				+0.7
3,087,832	-				+1.3
3,087,838	-				-3.2
3,087,839	+				+0.3
3,087,849	+				+0.0
3,087,879	-				+1.7
3,087,915	-				+0.2
3,087,989	+				-1.0
3,088,020	-				+0.6
3,088,020	-				-0.3
3,088,031	+				-0.1
3,088,032	-				-0.8
3,088,088	+				+0.0
3,088,088	+				-0.2
3,088,089	-				-0.1
3,088,125	+				-0.6
3,088,200	-		CA265_RS12385	0.17	-0.6
3,088,200	-		CA265_RS12385	0.17	+0.1
3,088,203	+		CA265_RS12385	0.17	-0.4
3,088,203	+		CA265_RS12385	0.17	-0.5
3,088,204	-		CA265_RS12385	0.17	-0.6
3,088,303	+		CA265_RS12385	0.27	-0.1
3,088,303	+		CA265_RS12385	0.27	+0.3
3,088,364	+		CA265_RS12385	0.33	+0.6
3,088,365	-		CA265_RS12385	0.33	-0.5
3,088,373	+		CA265_RS12385	0.34	+0.5
3,088,393	+		CA265_RS12385	0.36	-0.6
3,088,410	+		CA265_RS12385	0.37	+0.0
3,088,416	+		CA265_RS12385	0.38	-0.3
3,088,502	-		CA265_RS12385	0.46	-0.4
3,088,515	+		CA265_RS12385	0.48	+1.2
3,088,515	+		CA265_RS12385	0.48	+0.2
3,088,516	-		CA265_RS12385	0.48	-0.3
3,088,636	-		CA265_RS12385	0.59	-1.2
3,088,673	+		CA265_RS12385	0.63	+0.3
3,088,738	+		CA265_RS12385	0.69	-0.3
3,088,738	+		CA265_RS12385	0.69	-0.4
3,088,739	-		CA265_RS12385	0.69	+0.1
3,088,789	-		CA265_RS12385	0.74	-2.7
3,088,799	+		CA265_RS12385	0.75	-0.5
3,088,799	+		CA265_RS12385	0.75	-0.1
3,088,800	-		CA265_RS12385	0.75	+1.0