Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12120

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
3,003,150	-		CA265_RS12115	0.39	+0.7
3,003,457	-		CA265_RS12115	0.62	+0.7
3,003,484	+		CA265_RS12115	0.64	-1.6
3,003,485	-		CA265_RS12115	0.64	+0.1
3,003,528	-		CA265_RS12115	0.67	+1.3
3,003,528	-				+0.7
3,003,582	+		CA265_RS12115	0.71	+0.3
3,003,582	+		CA265_RS12115	0.71	+0.3
3,003,632	-		CA265_RS12115	0.75	+0.3
3,003,794	+		CA265_RS12115	0.88	-0.2
3,003,795	-		CA265_RS12115	0.88	-0.1
3,003,953	-				-0.4
3,003,958	-				+0.7
3,003,968	-				-0.6
3,004,024	-				+0.1
3,004,034	-				-1.0
3,004,050	-				-0.4
3,004,083	-				+0.1
3,004,136	+				-0.3
3,004,171	+				+0.5
3,004,285	-		CA265_RS12120	0.11	+1.1
3,004,285	-		CA265_RS12120	0.11	+0.1
3,004,285	-		CA265_RS12120	0.11	-0.3
3,004,288	-		CA265_RS12120	0.11	-0.9
3,004,305	+		CA265_RS12120	0.12	+0.7
3,004,305	+		CA265_RS12120	0.12	+0.7
3,004,306	-		CA265_RS12120	0.12	+0.0
3,004,336	-		CA265_RS12120	0.14	-0.1
3,004,338	+		CA265_RS12120	0.14	-1.5
3,004,357	-		CA265_RS12120	0.15	+1.1
3,004,473	+		CA265_RS12120	0.23	-0.1
3,004,480	+		CA265_RS12120	0.23	+1.6
3,004,484	-		CA265_RS12120	0.23	-0.9
3,004,505	+		CA265_RS12120	0.25	-0.5
3,004,518	+		CA265_RS12120	0.26	-1.7
3,004,524	+		CA265_RS12120	0.26	-0.2
3,004,528	-		CA265_RS12120	0.26	-0.3
3,004,591	+		CA265_RS12120	0.30	-0.3
3,004,738	+		CA265_RS12120	0.40	+0.9
3,004,771	+		CA265_RS12120	0.42	+0.1
3,004,857	+		CA265_RS12120	0.47	-0.2
3,004,857	+		CA265_RS12120	0.47	+0.3
3,004,857	+		CA265_RS12120	0.47	-0.3
3,004,858	-		CA265_RS12120	0.47	+1.3
3,004,881	+		CA265_RS12120	0.49	-0.4
3,004,882	-		CA265_RS12120	0.49	+0.1
3,004,884	-		CA265_RS12120	0.49	+0.6
3,004,923	+		CA265_RS12120	0.51	-0.7
3,004,923	+		CA265_RS12120	0.51	-0.0
3,004,924	-		CA265_RS12120	0.51	-1.0
3,004,924	-		CA265_RS12120	0.51	-0.7
3,004,925	+		CA265_RS12120	0.51	-1.0
3,004,925	+		CA265_RS12120	0.51	-0.2
3,004,926	-		CA265_RS12120	0.51	-1.2
3,004,930	-		CA265_RS12120	0.52	-0.2
3,004,954	+		CA265_RS12120	0.53	-1.3
3,004,954	+		CA265_RS12120	0.53	+1.5
3,004,954	+		CA265_RS12120	0.53	-0.4
3,004,955	-		CA265_RS12120	0.53	-0.4
3,004,955	-		CA265_RS12120	0.53	-0.3
3,004,955	-		CA265_RS12120	0.53	-1.3
3,005,265	+		CA265_RS12120	0.73	+1.6
3,005,265	+		CA265_RS12120	0.73	+0.7
3,005,327	-		CA265_RS12120	0.77	-0.8
3,005,327	-		CA265_RS12120	0.77	-0.6
3,005,327	-		CA265_RS12120	0.77	-1.2
3,005,386	+		CA265_RS12120	0.81	+1.3
3,005,398	-		CA265_RS12120	0.81	-1.1
3,005,398	-		CA265_RS12120	0.81	+1.3
3,005,398	-		CA265_RS12120	0.81	+1.1
3,005,398	-		CA265_RS12120	0.81	+0.4
3,005,473	+		CA265_RS12120	0.86	+1.5
3,005,473	+		CA265_RS12120	0.86	+0.5
3,005,474	-		CA265_RS12120	0.86	-0.6
3,005,502	-		CA265_RS12120	0.88	+0.7
3,005,557	+				-0.2
3,005,573	+				+0.9
3,005,573	+				+1.1
3,005,633	-				+0.3
3,005,715	-				-0.5
3,005,832	+				+1.2
3,005,909	-				+0.2
3,005,914	+				+0.1
3,005,921	-				+0.1
3,006,001	-				-0.7
3,006,001	-				-1.4
3,006,001	-				-0.1
3,006,044	+				-0.6
3,006,045	-				+2.7
3,006,045	-				+0.4
3,006,077	+				-0.4
3,006,077	+				+1.1
3,006,122	+		CA265_RS12125	0.13	-0.1
3,006,226	+		CA265_RS12125	0.20	-0.0
3,006,282	-		CA265_RS12125	0.24	+0.2
3,006,292	-		CA265_RS12125	0.25	-0.1
3,006,305	+		CA265_RS12125	0.26	+0.1
3,006,307	+		CA265_RS12125	0.26	-0.1
3,006,307	+		CA265_RS12125	0.26	-0.1
3,006,338	+		CA265_RS12125	0.28	+0.7
3,006,428	+		CA265_RS12125	0.34	+0.1
3,006,428	+		CA265_RS12125	0.34	-0.2
3,006,436	+		CA265_RS12125	0.35	-1.0
3,006,495	+		CA265_RS12125	0.39	+0.3
3,006,546	+		CA265_RS12125	0.42	+0.1
3,006,565	+		CA265_RS12125	0.44	-0.1
3,006,570	-		CA265_RS12125	0.44	-0.3
3,006,610	+		CA265_RS12125	0.47	-0.1
3,006,672	-		CA265_RS12125	0.51	+1.3