Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11130

Experiment: R2A with Vancomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.06 mg/ml
2,737,359	+		CA265_RS11120	0.74	+0.3
2,737,359	+		CA265_RS11120	0.74	-0.5
2,737,370	+		CA265_RS11120	0.75	-0.7
2,737,371	-		CA265_RS11120	0.75	+1.3
2,737,452	+		CA265_RS11120	0.82	-0.2
2,737,452	+		CA265_RS11120	0.82	+0.8
2,737,469	-		CA265_RS11120	0.83	+0.2
2,737,469	-		CA265_RS11120	0.83	+1.8
2,737,487	-		CA265_RS11120	0.85	+2.2
2,737,574	+				-1.3
2,737,575	-				+0.1
2,737,587	-				+0.8
2,737,587	-				+1.6
2,737,624	+				-1.7
2,737,667	-				-0.7
2,737,699	+				+0.8
2,737,699	+				-1.1
2,737,702	+				-2.1
2,737,832	+				-0.3
2,737,843	-				-0.0
2,737,877	+				-0.5
2,737,878	-				-1.0
2,737,902	-				-1.0
2,737,933	+				-0.9
2,737,990	+				-0.0
2,737,991	-				+0.5
2,737,993	-				-0.1
2,738,090	+		CA265_RS11125	0.16	+0.1
2,738,120	-		CA265_RS11125	0.28	+0.1
2,738,120	-		CA265_RS11125	0.28	+0.5
2,738,159	-		CA265_RS11125	0.42	+1.0
2,738,203	+		CA265_RS11125	0.59	-0.8
2,738,209	+		CA265_RS11125	0.61	-0.8
2,738,214	-		CA265_RS11125	0.63	+0.6
2,738,228	+		CA265_RS11125	0.69	-0.3
2,738,308	+				-0.6
2,738,309	-				-0.3
2,738,374	+				-2.4
2,738,374	+				+0.2
2,738,375	-				-0.1
2,738,375	-				+0.2
2,738,428	+				+1.9
2,738,429	-				+0.5
2,738,429	-				+0.4
2,738,472	+				+0.6
2,738,472	+				+0.3
2,738,516	-				+0.1
2,738,528	+				-0.7
2,738,529	-				+0.0
2,738,529	-				+0.6
2,738,529	-				-0.7
2,738,532	+				-0.3
2,738,557	+		CA265_RS11130	0.10	-0.7
2,738,574	+		CA265_RS11130	0.11	-0.2
2,738,574	+		CA265_RS11130	0.11	+0.0
2,738,574	+		CA265_RS11130	0.11	+0.4
2,738,725	+		CA265_RS11130	0.18	-0.1
2,738,730	+		CA265_RS11130	0.18	-0.4
2,738,745	-		CA265_RS11130	0.19	-0.4
2,738,808	-		CA265_RS11130	0.22	-0.2
2,738,894	+		CA265_RS11130	0.26	+0.2
2,738,895	-		CA265_RS11130	0.26	+0.8
2,738,939	-		CA265_RS11130	0.28	-0.9
2,738,945	+		CA265_RS11130	0.28	-1.0
2,738,948	-		CA265_RS11130	0.28	-0.3
2,739,016	+		CA265_RS11130	0.31	+0.4
2,739,207	+		CA265_RS11130	0.40	+0.9
2,739,208	-		CA265_RS11130	0.40	-1.6
2,739,208	-		CA265_RS11130	0.40	+3.9
2,739,208	-		CA265_RS11130	0.40	-1.4
2,739,265	-		CA265_RS11130	0.43	-1.1
2,739,275	-		CA265_RS11130	0.43	-0.6
2,739,369	-		CA265_RS11130	0.47	-0.0
2,739,427	-		CA265_RS11130	0.50	-1.1
2,739,427	-		CA265_RS11130	0.50	-1.2
2,739,469	-		CA265_RS11130	0.52	-0.4
2,739,470	+		CA265_RS11130	0.52	-0.6
2,739,471	-		CA265_RS11130	0.52	-0.2
2,739,500	+		CA265_RS11130	0.53	+0.6
2,739,609	-		CA265_RS11130	0.58	-0.1
2,739,634	-		CA265_RS11130	0.60	-0.1
2,739,636	+		CA265_RS11130	0.60	-0.7
2,739,637	-		CA265_RS11130	0.60	+0.4
2,739,639	-		CA265_RS11130	0.60	-0.4
2,739,639	-		CA265_RS11130	0.60	+0.1
2,739,740	+		CA265_RS11130	0.64	-1.0
2,739,768	+		CA265_RS11130	0.66	-1.5
2,739,769	-		CA265_RS11130	0.66	-2.1
2,739,769	-		CA265_RS11130	0.66	-0.1
2,739,769	-		CA265_RS11130	0.66	-0.0
2,739,786	-		CA265_RS11130	0.67	+0.8
2,739,810	+		CA265_RS11130	0.68	-0.6
2,739,819	+		CA265_RS11130	0.68	+0.1
2,739,820	-		CA265_RS11130	0.68	-0.1
2,739,874	+		CA265_RS11130	0.71	-0.5
2,739,911	-		CA265_RS11130	0.72	-0.3
2,739,915	+		CA265_RS11130	0.72	-0.0
2,739,916	-		CA265_RS11130	0.72	-0.6
2,739,916	-		CA265_RS11130	0.72	+0.4
2,739,996	+		CA265_RS11130	0.76	+0.5
2,740,003	-		CA265_RS11130	0.76	-0.4
2,740,049	+		CA265_RS11130	0.79	-0.6
2,740,061	+		CA265_RS11130	0.79	+0.8
2,740,102	-		CA265_RS11130	0.81	-1.0
2,740,115	-		CA265_RS11130	0.82	+0.1
2,740,168	-		CA265_RS11130	0.84	+0.0
2,740,173	-		CA265_RS11130	0.84	-0.1
2,740,173	-		CA265_RS11130	0.84	-0.1
2,740,173	-		CA265_RS11130	0.84	+0.2
2,740,184	+		CA265_RS11130	0.85	-0.5
2,740,188	-		CA265_RS11130	0.85	+0.5
2,740,225	-		CA265_RS11130	0.87	+0.3
2,740,287	-		CA265_RS11130	0.89	+0.7
2,740,311	-				+0.2
2,740,339	+				-0.8
2,740,349	-				+0.1
2,740,382	+				-0.3
2,740,416	-				-0.3
2,740,418	+				-0.8
2,740,419	-				+1.0
2,740,421	+				-0.3
2,740,453	+				+0.1
2,740,460	+				+0.6
2,740,504	+				-1.0
2,740,505	-				-0.8
2,740,545	-				+0.2
2,740,574	-				-0.8
2,740,576	-				+0.6
2,740,583	+				-0.1
2,740,585	+				-0.0
2,740,586	-				-0.3
2,740,586	-				-1.3
2,740,586	-				+0.9
2,740,719	+				+1.2
2,740,719	+				-0.5
2,740,742	-				-0.2
2,740,750	-				-0.8
2,740,816	-		CA265_RS11135	0.14	-1.0
2,740,816	-		CA265_RS11135	0.14	+0.1
2,740,851	+		CA265_RS11135	0.16	-0.1
2,740,851	+		CA265_RS11135	0.16	+0.8
2,740,852	-		CA265_RS11135	0.16	-0.2
2,740,970	-		CA265_RS11135	0.23	-0.3
2,740,972	-		CA265_RS11135	0.23	+0.4
2,741,016	+		CA265_RS11135	0.26	+0.4
2,741,017	-		CA265_RS11135	0.26	-0.4
2,741,091	-		CA265_RS11135	0.31	+0.1
2,741,096	-		CA265_RS11135	0.31	+1.1
2,741,201	+		CA265_RS11135	0.37	+0.9
2,741,296	+		CA265_RS11135	0.43	+0.4
2,741,314	+		CA265_RS11135	0.44	-0.6
2,741,315	-		CA265_RS11135	0.44	+0.6
2,741,381	+		CA265_RS11135	0.48	+1.4
2,741,381	+				+0.4
2,741,381	+		CA265_RS11135	0.48	+0.5
2,741,381	+		CA265_RS11135	0.48	+0.6
2,741,400	+		CA265_RS11135	0.50	+1.8
2,741,444	-		CA265_RS11135	0.52	-1.4
2,741,493	+		CA265_RS11135	0.55	-0.2